To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("arrayQualityMetrics")

In most cases, you don't need to download the package archive at all.

arrayQualityMetrics

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see arrayQualityMetrics.

Quality metrics on microarray data sets

Bioconductor version: 2.10

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). Report contain both general and platform-specific sections. Both one and two color array platforms are supported.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Audrey Kauffmann <akauffmann.bioinfo at gmail.com>

Citation (from within R, enter citation("arrayQualityMetrics")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("arrayQualityMetrics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("arrayQualityMetrics")
PDF Advanced topics: Customizing arrayQualityMetrics reports and programmatic processing of the output
PDF Introduction: microarray quality assessment with arrayQualityMetrics
PDF Reference Manual

Details

biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel
Version 3.12.0
In Bioconductor since BioC 2.1 (R-2.6) (8.5 years)
License LGPL (>= 2)
Depends
Imports affy, affyPLM(>= 1.27.3), beadarray, Biobase, Cairo (>= 1.4-6), genefilter, graphics, grDevices, grid, Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, simpleaffy, stats, SVGAnnotation (>= 0.9-0), utils, vsn(>= 3.23.3), XML
LinkingTo
Suggests ALLMLL, CCl4
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source arrayQualityMetrics_3.12.0.tar.gz
Windows Binary arrayQualityMetrics_3.12.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/arrayQualityMetrics/tree/release-2.10
Package Short Url http://bioconductor.org/packages/arrayQualityMetrics/
Package Downloads Report Download Stats

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