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BioC experimental data: CHECK report for MUGAExampleData on malbec2

This page was generated on 2017年10月18日 15:09:42 -0400 (2017年10月18日).

Package 203/314 Hostname OS / Arch INSTALL BUILD CHECK BUILD BIN
MUGAExampleData 0.110.0
Daniel Gatti
Snapshot Date: 2017年10月18日 09:00:07 -0400 (Wed, 18 Oct 2017)
URL: https://git.bioconductor.org/packages/MUGAExampleData
Branch: RELEASE_3_5
Last Commit: 2fb48ee
Last Changed Date: 2017年08月16日 15:08:07 -0400 (Wed, 16 Aug 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64 NotNeeded OK [ OK ] UNNEEDED, same version exists in internal repository

Summary

Package: MUGAExampleData
Version: 0.110.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings MUGAExampleData_0.110.0.tar.gz
StartedAt: 2017年10月18日 10:58:18 -0400 (2017年10月18日)
EndedAt: 2017年10月18日 10:58:50 -0400 (2017年10月18日)
EllapsedTime: 31.5 seconds
RetCode: 0
Status: OK
CheckDir: MUGAExampleData.Rcheck
Warnings: 0

Command output

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### Running command:
###
### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings MUGAExampleData_0.110.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/MUGAExampleData.Rcheck’
* using R version 3.4.2 (2017年09月28日)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MUGAExampleData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MUGAExampleData’ version ‘0.110.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MUGAExampleData’ can be installed ... OK
* checking installed package size ... NOTE
 installed size is 88.7Mb
 sub-directories of 1Mb or more:
 data 88.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
 ‘/home/biocbuild/bbs-3.5-data-experiment/meat/MUGAExampleData.Rcheck/00check.log’
for details.

MUGAExampleData.Rcheck/00install.out:

* installing *source* package ‘MUGAExampleData’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MUGAExampleData)

MUGAExampleData.Rcheck/MUGAExampleData-Ex.timings:

name user system elapsed
FinalReport1 3.652 0.100 3.753
FinalReport2 1.308 0.044 1.352
MUGAExampleData-package 2.916 0.076 2.994
Samples1 0.000 0.000 0.001
Samples2 0.000 0.000 0.001
call.rate.batch 0.000 0.000 0.001
geno 1.052 0.020 1.068
model.probs 0.644 0.008 0.653
pheno 0.004 0.000 0.006
x 0.092 0.000 0.092
y 0.092 0.008 0.098

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