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BioC experimental data: CHECK report for grndata on malbec2

This page was generated on 2017年08月15日 15:07:57 -0400 (2017年8月15日).

Package 124/316 Hostname OS / Arch INSTALL BUILD CHECK BUILD BIN
grndata 1.8.0
Pau Bellot
Snapshot Date: 2017年08月15日 09:00:06 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_5/experiment/pkgs/grndata
Last Changed Rev: 4155 / Revision: 4227
Last Changed Date: 2017年04月24日 16:09:26 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64 NotNeeded OK [ OK ] UNNEEDED, same version exists in internal repository

Summary

Package: grndata
Version: 1.8.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings grndata_1.8.0.tar.gz
StartedAt: 2017年08月15日 10:46:07 -0400 (2017年8月15日)
EndedAt: 2017年08月15日 10:46:42 -0400 (2017年8月15日)
EllapsedTime: 34.8 seconds
RetCode: 0
Status: OK
CheckDir: grndata.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings grndata_1.8.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/grndata.Rcheck’
* using R version 3.4.1 (2017年06月30日)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘grndata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘grndata’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘grndata’ can be installed ... OK
* checking installed package size ... NOTE
 installed size is 54.4Mb
 sub-directories of 1Mb or more:
 data 54.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
 Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
 ‘/home/biocbuild/bbs-3.5-data-experiment/meat/grndata.Rcheck/00check.log’
for details.

grndata.Rcheck/00install.out:

* installing *source* package ‘grndata’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (grndata)

grndata.Rcheck/grndata-Ex.timings:

name user system elapsed
Availabledata 0.016 0.000 0.014
getData 0.276 0.032 0.306
gnw1565.data 0.284 0.012 0.295
gnw1565.net 0.104 0.012 0.114
gnw2000.data 0.296 0.028 0.323
gnw2000.net 0.164 0.000 0.164
rogers1000.data 0.056 0.000 0.056
rogers1000.net 0.032 0.000 0.033
syntren1000.data 0.068 0.000 0.071
syntren1000.net 0.060 0.004 0.064
syntren300.data 0.016 0.000 0.019
syntren300.net 0.008 0.000 0.004
toy.data 0.000 0.000 0.002
toy.net 0.004 0.000 0.001

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