Back to the "Build/check report"

BioC experimental data: CHECK report for PWMEnrich.Hsapiens.background on malbec2

This page was generated on 2017年08月15日 15:07:53 -0400 (2017年8月15日).

Package 237/316 Hostname OS / Arch INSTALL BUILD CHECK BUILD BIN
PWMEnrich.Hsapiens.background 4.10.0
Robert Stojnic
Snapshot Date: 2017年08月15日 09:00:06 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_5/experiment/pkgs/PWMEnrich.Hsapiens.background
Last Changed Rev: 4155 / Revision: 4227
Last Changed Date: 2017年04月24日 16:09:26 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64 NotNeeded OK [ WARNINGS ] UNNEEDED, same version exists in internal repository

Summary

Package: PWMEnrich.Hsapiens.background
Version: 4.10.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings PWMEnrich.Hsapiens.background_4.10.0.tar.gz
StartedAt: 2017年08月15日 11:00:23 -0400 (2017年8月15日)
EndedAt: 2017年08月15日 11:02:44 -0400 (2017年8月15日)
EllapsedTime: 141.1 seconds
RetCode: 0
Status: WARNINGS
CheckDir: PWMEnrich.Hsapiens.background.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings PWMEnrich.Hsapiens.background_4.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/PWMEnrich.Hsapiens.background.Rcheck’
* using R version 3.4.1 (2017年06月30日)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PWMEnrich.Hsapiens.background/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PWMEnrich.Hsapiens.background’ version ‘4.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PWMEnrich.Hsapiens.background’ can be installed ... OK
* checking installed package size ... NOTE
 installed size is 15.8Mb
 sub-directories of 1Mb or more:
 data 15.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
 
 Note: significantly better compression could be obtained
 by using R CMD build --resave-data
 old_size new_size compress
 MotifDb.Hsap.PFM.RData 148Kb 102Kb xz
 MotifDb.Hsap.RData 580Kb 451Kb xz
 PWMCutoff4.hg19.MotifDb.Hsap.RData 524Kb 407Kb xz
 PWMCutoff5.hg19.MotifDb.Hsap.RData 524Kb 408Kb xz
 PWMLogn.hg19.MotifDb.Hsap.RData 820Kb 647Kb xz
 PWMPvalueCutoff1e2.hg19.MotifDb.Hsap.RData 540Kb 415Kb xz
 PWMPvalueCutoff1e3.hg19.MotifDb.Hsap.RData 540Kb 415Kb xz
 PWMPvalueCutoff1e4.hg19.MotifDb.Hsap.RData 540Kb 415Kb xz
 hg19.upstream2000.RData 11.6Mb 9.1Mb xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
 ‘/home/biocbuild/bbs-3.5-data-experiment/meat/PWMEnrich.Hsapiens.background.Rcheck/00check.log’
for details.

PWMEnrich.Hsapiens.background.Rcheck/00install.out:

* installing *source* package ‘PWMEnrich.Hsapiens.background’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (PWMEnrich.Hsapiens.background)

PWMEnrich.Hsapiens.background.Rcheck/PWMEnrich.Hsapiens.background-Ex.timings:

name user system elapsed
PWMEnrich.Hsapiens.background-package 3.160 0.020 3.182

AltStyle によって変換されたページ (->オリジナル) /