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BioC experimental data: CHECK report for ChIPXpressData on malbec2

This page was generated on 2017年08月15日 15:07:51 -0400 (2017年8月15日).

Package 50/316 Hostname OS / Arch INSTALL BUILD CHECK BUILD BIN
ChIPXpressData 1.14.0
George Wu
Snapshot Date: 2017年08月15日 09:00:06 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_5/experiment/pkgs/ChIPXpressData
Last Changed Rev: 4155 / Revision: 4227
Last Changed Date: 2017年04月24日 16:09:26 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64 NotNeeded OK [ WARNINGS ] UNNEEDED, same version exists in internal repository

Summary

Package: ChIPXpressData
Version: 1.14.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings ChIPXpressData_1.14.0.tar.gz
StartedAt: 2017年08月15日 10:35:14 -0400 (2017年8月15日)
EndedAt: 2017年08月15日 10:38:49 -0400 (2017年8月15日)
EllapsedTime: 215.1 seconds
RetCode: 0
Status: WARNINGS
CheckDir: ChIPXpressData.Rcheck
Warnings: 1

Command output

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### Running command:
###
### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings ChIPXpressData_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/ChIPXpressData.Rcheck’
* using R version 3.4.1 (2017年06月30日)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChIPXpressData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChIPXpressData’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
 .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChIPXpressData’ can be installed ... OK
* checking installed package size ... NOTE
 installed size is 4306.8Mb
 sub-directories of 1Mb or more:
 extdata 4305.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
 
 Note: significantly better compression could be obtained
 by using R CMD build --resave-data
 old_size new_size compress
 GPL1261mean.rda 215Kb 180Kb xz
 GPL1261var.rda 216Kb 189Kb xz
 GPL570mean.rda 198Kb 159Kb xz
 GPL570var.rda 209Kb 181Kb xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
 ‘/home/biocbuild/bbs-3.5-data-experiment/meat/ChIPXpressData.Rcheck/00check.log’
for details.

ChIPXpressData.Rcheck/00install.out:

* installing *source* package ‘ChIPXpressData’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (ChIPXpressData)

ChIPXpressData.Rcheck/ChIPXpressData-Ex.timings:

name user system elapsed
DB_GPL1261.bigmemory 0.072 0.040 1.169
DB_GPL570.bigmemory 0.312 0.072 0.386
GPL1261mean 0.028 0.000 0.026
GPL1261var 0.012 0.000 0.012
GPL570mean 0.012 0.004 0.014
GPL570var 0.012 0.000 0.014

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