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BioC experimental data: CHECK report for yeastGSData on malbec1

This page was generated on 2017年04月15日 16:49:29 -0400 (2017年4月15日).

Package 305/310 Hostname OS / Arch INSTALL BUILD CHECK BUILD BIN
yeastGSData 0.12.0
R. Gentleman
Snapshot Date: 2017年04月15日 09:20:05 -0400 (Sat, 15 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_4/experiment/pkgs/yeastGSData
Last Changed Rev: 3958 / Revision: 4141
Last Changed Date: 2016年10月17日 14:47:53 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64 NotNeeded OK [ WARNINGS ] UNNEEDED, same version exists in internal repository

Summary

Package: yeastGSData
Version: 0.12.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings yeastGSData_0.12.0.tar.gz
StartedAt: 2017年04月15日 11:23:57 -0400 (2017年4月15日)
EndedAt: 2017年04月15日 11:25:35 -0400 (2017年4月15日)
EllapsedTime: 98.2 seconds
RetCode: 0
Status: WARNINGS
CheckDir: yeastGSData.Rcheck
Warnings: 1

Command output

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### Running command:
###
### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings yeastGSData_0.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/yeastGSData.Rcheck’
* using R version 3.3.3 (2017年03月06日)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘yeastGSData/DESCRIPTION’ ... OK
* this is package ‘yeastGSData’ version ‘0.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘yeastGSData’ can be installed ... OK
* checking installed package size ... NOTE
 installed size is 65.2Mb
 sub-directories of 1Mb or more:
 extdata 64.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
prepare_Rd: BayesFactorNGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorNGS.Rd:26-27: Dropping empty section \references
prepare_Rd: BayesFactorPGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorPGS.Rd:26-27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
 
 Note: significantly better compression could be obtained
 by using R CMD build --resave-data
 old_size new_size compress
 BayesFactorNGS.rda 46Kb 18Kb xz
 BayesFactorPGS.rda 70Kb 32Kb xz
 MIPSGS.rda 15Kb 9Kb xz
 Mpact.rda 199Kb 136Kb bzip2
 NEGGS.rda 600Kb 40Kb xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs
See
 ‘/home/biocbuild/bbs-3.4-data-experiment/meat/yeastGSData.Rcheck/00check.log’
for details.

yeastGSData.Rcheck/00install.out:

* installing *source* package ‘yeastGSData’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (yeastGSData)

yeastGSData.Rcheck/yeastGSData-Ex.timings:

name user system elapsed
BayesFactorNGS 0.020 0.000 0.018
BayesFactorPGS 0.008 0.000 0.009
BinaryGS 0.004 0.000 0.002
MIPSGS 0.012 0.000 0.012
Mpact 0.04 0.00 0.04
MpactEvidenceCodes 0.004 0.000 0.002
NEGGS 3.264 0.016 3.280
POSPS 0.000 0.000 0.002
PRS 0.000 0.000 0.001

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