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BioC experimental data: CHECK report for tweeDEseqCountData on malbec1

This page was generated on 2017年04月15日 16:49:32 -0400 (2017年4月15日).

Package 298/310 Hostname OS / Arch INSTALL BUILD CHECK BUILD BIN
tweeDEseqCountData 1.12.0
Juan R Gonzalez
Snapshot Date: 2017年04月15日 09:20:05 -0400 (Sat, 15 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_4/experiment/pkgs/tweeDEseqCountData
Last Changed Rev: 3958 / Revision: 4141
Last Changed Date: 2016年10月17日 14:47:53 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64 NotNeeded OK [ OK ] UNNEEDED, same version exists in internal repository

Summary

Package: tweeDEseqCountData
Version: 1.12.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings tweeDEseqCountData_1.12.0.tar.gz
StartedAt: 2017年04月15日 11:23:24 -0400 (2017年4月15日)
EndedAt: 2017年04月15日 11:23:50 -0400 (2017年4月15日)
EllapsedTime: 25.7 seconds
RetCode: 0
Status: OK
CheckDir: tweeDEseqCountData.Rcheck
Warnings: 0

Command output

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### Running command:
###
### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings tweeDEseqCountData_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/tweeDEseqCountData.Rcheck’
* using R version 3.3.3 (2017年03月06日)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tweeDEseqCountData/DESCRIPTION’ ... OK
* this is package ‘tweeDEseqCountData’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tweeDEseqCountData’ can be installed ... OK
* checking installed package size ... NOTE
 installed size is 41.3Mb
 sub-directories of 1Mb or more:
 data 41.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘Biobase’
 These packages need to be imported from (in the NAMESPACE file)
 for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
 ‘/home/biocbuild/bbs-3.4-data-experiment/meat/tweeDEseqCountData.Rcheck/00check.log’
for details.

tweeDEseqCountData.Rcheck/00install.out:

* installing *source* package ‘tweeDEseqCountData’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (tweeDEseqCountData)

tweeDEseqCountData.Rcheck/tweeDEseqCountData-Ex.timings:

name user system elapsed
annotEnsembl63 0.380 0.012 0.392
cheung 0.260 0.004 0.267
commonPickrell1Huang 0.984 0.028 1.013
genderGenes 0.000 0.000 0.001
hkGenes 0.004 0.000 0.003
montgomery 0.304 0.004 0.306
pickrell 0.368 0.000 0.368

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