BioC experimental data: CHECK report for facopy.annot on malbec1
This page was generated on 2017年04月15日 16:49:41 -0400 (2017年4月15日).
Package 92/310 Hostname OS / Arch INSTALL BUILD CHECK BUILD BIN
facopy.annot 0.108.0David Mosen-Ansorena
Snapshot Date: 2017年04月15日 09:20:05 -0400 (Sat, 15 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_4/experiment/pkgs/facopy.annot
Last Changed Rev: 3958 / Revision: 4141
Last Changed Date: 2016年10月17日 14:47:53 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64 NotNeeded OK [
OK ] UNNEEDED, same version exists in internal repository
Summary
Package: facopy.annot
Version: 0.108.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings facopy.annot_0.108.0.tar.gz
StartedAt: 2017年04月15日 10:53:05 -0400 (2017年4月15日)
EndedAt: 2017年04月15日 10:53:29 -0400 (2017年4月15日)
EllapsedTime: 24.0 seconds
RetCode: 0
Status: OK
CheckDir: facopy.annot.Rcheck
Warnings: 0
Command output
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### Running command:
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### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings facopy.annot_0.108.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/facopy.annot.Rcheck’
* using R version 3.3.3 (2017年03月06日)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘facopy.annot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘facopy.annot’ version ‘0.108.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘facopy.annot’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
data 5.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.4-data-experiment/meat/facopy.annot.Rcheck/00check.log’
for details.
facopy.annot.Rcheck/00install.out:
* installing *source* package ‘facopy.annot’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (facopy.annot)
facopy.annot.Rcheck/facopy.annot-Ex.timings:
name user system elapsed
hg18_armLimits 0.008 0.004 0.013
hg18_db_gsk_bladder 0.008 0.000 0.010
hg18_db_gsk_blood 0.012 0.000 0.015
hg18_db_gsk_bone 0.008 0.000 0.008
hg18_db_gsk_brain 0.012 0.000 0.012
hg18_db_gsk_breast 0.016 0.000 0.015
hg18_db_gsk_cervix 0.012 0.000 0.011
hg18_db_gsk_cns 0.012 0.000 0.013
hg18_db_gsk_colon 0.012 0.000 0.012
hg18_db_gsk_connective_tissue 0.008 0.000 0.010
hg18_db_gsk_esophagus 0.012 0.000 0.011
hg18_db_gsk_eye 0.004 0.000 0.003
hg18_db_gsk_kidney 0.012 0.000 0.010
hg18_db_gsk_liver 0.012 0.000 0.013
hg18_db_gsk_lung 0.020 0.000 0.017
hg18_db_gsk_muscle 0.008 0.000 0.009
hg18_db_gsk_ovary 0.012 0.000 0.012
hg18_db_gsk_pancreas 0.012 0.000 0.010
hg18_db_gsk_pharynx 0.008 0.000 0.008
hg18_db_gsk_placenta 0.012 0.000 0.010
hg18_db_gsk_prostate 0.012 0.000 0.011
hg18_db_gsk_rectum 0.008 0.000 0.008
hg18_db_gsk_sarcoma 0.008 0.000 0.007
hg18_db_gsk_stomach 0.012 0.000 0.010
hg18_db_gsk_synovium 0.000 0.000 0.002
hg18_db_gsk_thyroid 0.012 0.000 0.010
hg18_db_gsk_uterus 0.012 0.000 0.011
hg18_db_nci60 0.020 0.000 0.017
hg18_db_tcga_blca 0.016 0.000 0.017
hg18_db_tcga_brca 0.036 0.000 0.035
hg18_db_tcga_cesc 0.016 0.000 0.015
hg18_db_tcga_coad 0.016 0.000 0.016
hg18_db_tcga_gbm 0.016 0.000 0.017
hg18_db_tcga_hnsc 0.016 0.000 0.016
hg18_db_tcga_kirc 0.020 0.000 0.017
hg18_db_tcga_kirp 0.016 0.000 0.016
hg18_db_tcga_lgg 0.016 0.000 0.015
hg18_db_tcga_lihc 0.020 0.000 0.019
hg18_db_tcga_luad 0.016 0.000 0.018
hg18_db_tcga_lusc 0.016 0.000 0.018
hg18_db_tcga_ov 0.016 0.004 0.017
hg18_db_tcga_prad 0.012 0.004 0.016
hg18_db_tcga_read 0.016 0.000 0.017
hg18_db_tcga_stad 0.020 0.000 0.017
hg18_db_tcga_thca 0.012 0.000 0.013
hg18_db_tcga_ucec 0.016 0.000 0.017
hg18_feature_cancergene 0.004 0.000 0.004
hg18_feature_ensembl 0.132 0.000 0.133
hg18_feature_lincRNA 0.012 0.004 0.016
hg18_feature_mirnas 0.004 0.000 0.005
hg18_feature_oncogene 0.004 0.000 0.003
hg18_feature_tumorsupressor 0.004 0.000 0.003
hg19_armLimits 0.004 0.000 0.002
hg19_db_gsk_bladder 0.012 0.000 0.012
hg19_db_gsk_blood 0.020 0.000 0.018
hg19_db_gsk_bone 0.008 0.000 0.009
hg19_db_gsk_brain 0.012 0.000 0.011
hg19_db_gsk_breast 0.016 0.000 0.015
hg19_db_gsk_cervix 0.016 0.000 0.015
hg19_db_gsk_cns 0.012 0.000 0.013
hg19_db_gsk_colon 0.012 0.000 0.014
hg19_db_gsk_connective_tissue 0.012 0.000 0.011
hg19_db_gsk_esophagus 0.012 0.000 0.013
hg19_db_gsk_eye 0.004 0.000 0.003
hg19_db_gsk_kidney 0.012 0.000 0.011
hg19_db_gsk_liver 0.016 0.000 0.012
hg19_db_gsk_lung 0.02 0.00 0.02
hg19_db_gsk_muscle 0.008 0.000 0.009
hg19_db_gsk_ovary 0.008 0.000 0.011
hg19_db_gsk_pancreas 0.012 0.000 0.011
hg19_db_gsk_pharynx 0.012 0.000 0.009
hg19_db_gsk_placenta 0.012 0.000 0.011
hg19_db_gsk_prostate 0.012 0.000 0.012
hg19_db_gsk_rectum 0.008 0.000 0.009
hg19_db_gsk_sarcoma 0.004 0.000 0.006
hg19_db_gsk_stomach 0.012 0.000 0.010
hg19_db_gsk_synovium 0.004 0.000 0.005
hg19_db_gsk_thyroid 0.008 0.000 0.011
hg19_db_gsk_uterus 0.008 0.000 0.011
hg19_db_nci60 0.016 0.000 0.017
hg19_db_tcga_blca 0.016 0.000 0.018
hg19_db_tcga_brca 0.016 0.000 0.016
hg19_db_tcga_cesc 0.020 0.000 0.019
hg19_db_tcga_coad 0.016 0.000 0.016
hg19_db_tcga_gbm 0.020 0.000 0.019
hg19_db_tcga_hnsc 0.016 0.000 0.017
hg19_db_tcga_kirc 0.016 0.000 0.019
hg19_db_tcga_kirp 0.016 0.000 0.019
hg19_db_tcga_lgg 0.016 0.000 0.018
hg19_db_tcga_lihc 0.016 0.004 0.017
hg19_db_tcga_luad 0.02 0.00 0.02
hg19_db_tcga_lusc 0.016 0.000 0.017
hg19_db_tcga_ov 0.016 0.000 0.017
hg19_db_tcga_prad 0.020 0.000 0.017
hg19_db_tcga_read 0.016 0.000 0.017
hg19_db_tcga_stad 0.016 0.000 0.016
hg19_db_tcga_thca 0.012 0.000 0.014
hg19_db_tcga_ucec 0.016 0.000 0.017
hg19_feature_cancergene 0.004 0.000 0.005
hg19_feature_ensembl 0.288 0.000 0.290
hg19_feature_lincRNA 0.016 0.000 0.015
hg19_feature_mirnas 0.008 0.000 0.008
hg19_feature_oncogene 0.000 0.000 0.003
hg19_feature_tumorsupressor 0.004 0.000 0.004
mm8_armLimits 0.000 0.000 0.001
mm8_feature_ensembl 0.256 0.000 0.257
mm8_feature_mirnas 0.004 0.000 0.006