This page was generated on 2017年04月15日 16:49:28 -0400 (2017年4月15日).
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings SpikeIn_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/SpikeIn.Rcheck’ * using R version 3.3.3 (2017年03月06日) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SpikeIn/DESCRIPTION’ ... OK * this is package ‘SpikeIn’ version ‘1.16.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SpikeIn’ can be installed ... OK * checking installed package size ... NOTE installed size is 63.1Mb sub-directories of 1Mb or more: data 63.0Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... WARNING Found directory ‘R’ with no source files. * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Error in tools:::.check_packages_used(package = "SpikeIn") : directory '/home/biocbuild/bbs-3.4-data-experiment/meat/SpikeIn.Rcheck/SpikeIn' does not contain R code Execution halted * checking S3 generic/method consistency ... WARNING Error in tools::checkS3methods(package = "SpikeIn") : directory '/home/biocbuild/bbs-3.4-data-experiment/meat/SpikeIn.Rcheck/SpikeIn' does not contain R code Execution halted See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... WARNING Error in tools::checkReplaceFuns(package = "SpikeIn") : directory '/home/biocbuild/bbs-3.4-data-experiment/meat/SpikeIn.Rcheck/SpikeIn' does not contain R code Execution halted The argument of a replacement function which corresponds to the right hand side must be named ‘value’. * checking foreign function calls ... NOTE Error in tools::checkFF(package = "SpikeIn", registration = FALSE, check_DUP = TRUE) : directory '/home/biocbuild/bbs-3.4-data-experiment/meat/SpikeIn.Rcheck/SpikeIn' does not contain R code Execution halted See chapter ‘System and foreign language interfaces’ in the ‘Writing R Extensions’ manual. * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Error in tools::codoc(package = "SpikeIn") : directory '/home/biocbuild/bbs-3.4-data-experiment/meat/SpikeIn.Rcheck/SpikeIn' does not contain R code Execution halted Error in tools::codocClasses(package = "SpikeIn") : directory '/home/biocbuild/bbs-3.4-data-experiment/meat/SpikeIn.Rcheck/SpikeIn' does not contain R code Execution halted * checking Rd \usage sections ... NOTE Error in tools::checkDocStyle(package = "SpikeIn") : directory '/home/biocbuild/bbs-3.4-data-experiment/meat/SpikeIn.Rcheck/SpikeIn' does not contain R code Execution halted The \usage entries for S3 methods should use the \method markup and not their full name. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Warning: package needs dependence on R (>= 2.10) * checking examples ... NONE * checking PDF version of manual ... OK * DONE Status: 5 WARNINGs, 4 NOTEs See ‘/home/biocbuild/bbs-3.4-data-experiment/meat/SpikeIn.Rcheck/00check.log’ for details.
SpikeIn.Rcheck/00install.out:
* installing *source* package ‘SpikeIn’ ... ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (SpikeIn)