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BioC experimental data: CHECK report for QDNAseq.hg19 on malbec1

This page was generated on 2017年04月15日 16:49:45 -0400 (2017年4月15日).

Package 237/310 Hostname OS / Arch INSTALL BUILD CHECK BUILD BIN
QDNAseq.hg19 1.4.0
Daoud Sie
Snapshot Date: 2017年04月15日 09:20:05 -0400 (Sat, 15 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_4/experiment/pkgs/QDNAseq.hg19
Last Changed Rev: 3958 / Revision: 4141
Last Changed Date: 2016年10月17日 14:47:53 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64 NotNeeded OK [ OK ] UNNEEDED, same version exists in internal repository

Summary

Package: QDNAseq.hg19
Version: 1.4.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings QDNAseq.hg19_1.4.0.tar.gz
StartedAt: 2017年04月15日 11:11:06 -0400 (2017年4月15日)
EndedAt: 2017年04月15日 11:13:21 -0400 (2017年4月15日)
EllapsedTime: 135.6 seconds
RetCode: 0
Status: OK
CheckDir: QDNAseq.hg19.Rcheck
Warnings: 0

Command output

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### Running command:
###
### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings QDNAseq.hg19_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/QDNAseq.hg19.Rcheck’
* using R version 3.3.3 (2017年03月06日)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘QDNAseq.hg19/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘QDNAseq.hg19’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘QDNAseq.hg19’ can be installed ... OK
* checking installed package size ... NOTE
 installed size is 35.4Mb
 sub-directories of 1Mb or more:
 data 35.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
 user system elapsed
hg19.1kbp.SR50 18.012 0.284 18.305
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
 ‘/home/biocbuild/bbs-3.4-data-experiment/meat/QDNAseq.hg19.Rcheck/00check.log’
for details.

QDNAseq.hg19.Rcheck/00install.out:

* installing *source* package ‘QDNAseq.hg19’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (QDNAseq.hg19)

QDNAseq.hg19.Rcheck/QDNAseq.hg19-Ex.timings:

name user system elapsed
QDNAseq.hg19-package 0.940 0.044 0.981
hg19.1000kbp.SR50 0.032 0.004 0.036
hg19.100kbp.SR50 0.368 0.012 0.379
hg19.10kbp.SR50 2.536 0.060 2.599
hg19.15kbp.SR50 1.104 0.052 1.159
hg19.1kbp.SR50 18.012 0.284 18.305
hg19.30kbp.SR50 0.452 0.072 0.521
hg19.500kbp.SR50 0.032 0.016 0.049
hg19.50kbp.SR50 0.276 0.040 0.313
hg19.5kbp.SR50 3.584 0.132 3.718

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