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GPU-enabled build/check report for BioC 3.23
Report updated every 6 hours

This page was generated on 2025年12月03日 19:45 -0500 (2025年12月03日).

HostnameOSArch (*)R versionInstalled pkgs

biocgpu Linux (Ubuntu 24.04.2 LTS) x86_64 R Under development (unstable) (2025年11月17日 r89032) -- "Unsuffered Consequences" 288

kakapo1 Linux (Ubuntu 24.04.3 LTS) x86_64 R Under development (unstable) (2025年10月31日 r88977) -- "Unsuffered Consequences" 275

Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2/3 Hostname OS / Arch INSTALL BUILD CHECK

RbowtieCuda 1.3.0 (landing page)
Franck RICHARD

Snapshot Date: 2025年12月03日 16:00 -0500 (Wed, 03 Dec 2025)

git_url: https://git.bioconductor.org/packages/RbowtieCuda

git_branch: devel

git_last_commit: fb8220d

git_last_commit_date: 2025年10月29日 11:35:43 -0500 (Wed, 29 Oct 2025)

biocgpu Linux (Ubuntu 24.04.2 LTS) / x86_64 OK OK OK UNNEEDED, same version is already published

kakapo1 Linux (Ubuntu 24.04.3 LTS) / x86_64 OK OK OK

BUILD results for RbowtieCuda on biocgpu

To the developers/maintainers of the RbowtieCuda package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: RbowtieCuda

Version: 1.3.0

Command: /home/biocbuild/bbs-3.23-bioc-gpu/R/bin/R CMD build --keep-empty-dirs --no-resave-data RbowtieCuda

StartedAt: 2025年12月03日 16:51:59 -0500 (2025年12月03日)

EndedAt: 2025年12月03日 16:56:40 -0500 (2025年12月03日)

EllapsedTime: 281.2 seconds

RetCode: 0

Status: OK

PackageFile: RbowtieCuda_1.3.0.tar.gz

PackageFileSize: 27.95 MiB

Command output

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### Running command:
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### /home/biocbuild/bbs-3.23-bioc-gpu/R/bin/R CMD build --keep-empty-dirs --no-resave-data RbowtieCuda
###
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* checking for file ‘RbowtieCuda/DESCRIPTION’ ... OK
* preparing ‘RbowtieCuda’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/3.28.3/CompilerIdC/tmp’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/3.28.3/CompilerIdCXX/tmp’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/CMakeScratch’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/pkgRedirects’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/contrib/moderngpu/CMakeFiles/moderngpu.dir/src’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvBowtie/CMakeFiles/nvBowtie.dir/bowtie2/cuda’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/basic/cuda’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/fmindex’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/fmindex’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/output’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/reads’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/sequence’ is empty
WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/sufsort’ is empty
* building ‘RbowtieCuda_1.3.0.tar.gz’
Warning: file 'RbowtieCuda/src/nvbio/contrib/zlib-1.2.7/configure' did not have execute permissions: corrected