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This page was generated on 2023年04月11日 14:50:27 -0400 (2023年4月11日).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2 Linux (Ubuntu 20.04.5 LTS) x86_64 4.2.3 (2023年03月15日) -- "Shortstop Beagle" 4502
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for seqc on nebbiolo2


To the developers/maintainers of the seqc package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 348/416 Hostname OS / Arch INSTALL BUILD CHECK
seqc 1.32.0 (landing page)
Yang Liao and Wei Shi
Snapshot Date: 2023年04月11日 07:30:01 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/seqc
git_branch: RELEASE_3_16
git_last_commit: 9d216dd
git_last_commit_date: 2022年11月01日 11:03:23 -0400 (Tue, 01 Nov 2022)
nebbiolo2 Linux (Ubuntu 20.04.5 LTS) / x86_64 OK OK WARNINGS UNNEEDED, same version is already published

Summary

Package: seqc
Version: 1.32.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:seqc.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings seqc_1.32.0.tar.gz
StartedAt: 2023年04月11日 12:17:45 -0400 (2023年4月11日)
EndedAt: 2023年04月11日 12:19:12 -0400 (2023年4月11日)
EllapsedTime: 86.5 seconds
RetCode: 0
Status: WARNINGS
CheckDir: seqc.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:seqc.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings seqc_1.32.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/seqc.Rcheck’
* using R version 4.2.3 (2023年03月15日)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘seqc/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘seqc’ version ‘1.32.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘seqc’ can be installed ... OK
* checking installed package size ... NOTE
 installed size is 306.7Mb
 sub-directories of 1Mb or more:
 data 306.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
 LazyData DB of 306.6 MB without LazyDataCompression set
 See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
 ‘seqc.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
 ‘/home/biocbuild/bbs-3.16-data-experiment/meat/seqc.Rcheck/00check.log’
for details.

Installation output

seqc.Rcheck/00install.out

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###
### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL seqc
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘seqc’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (seqc)

Tests output


Example timings

seqc.Rcheck/seqc-Ex.timings

name user system elapsed
FCData 0.442 0.099 0.542
FCJunctions 0.003 0.000 0.003
SEQC-package 0.006 0.000 0.005
taqman 0.001 0.004 0.004

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