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###
### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:microRNAome.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings microRNAome_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/microRNAome.Rcheck’
* using R version 4.2.3 (2023年03月15日)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘microRNAome/DESCRIPTION’ ... OK
* this is package ‘microRNAome’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘microRNAome’ can be installed ... OK
* checking installed package size ... NOTE
 installed size is 5.5Mb
 sub-directories of 1Mb or more:
 data 5.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
 Note: found 13 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
 Running ‘runTests.R’
 OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
 ‘/home/biocbuild/bbs-3.16-data-experiment/meat/microRNAome.Rcheck/00check.log’
for details.

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###
### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL microRNAome
###
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* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘microRNAome’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (microRNAome)

R version 4.2.3 (2023年03月15日) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("microRNAome")
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
 colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
 colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
 colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
 colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
 colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
 colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
 colWeightedMeans, colWeightedMedians, colWeightedSds,
 colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
 rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
 rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
 rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
 rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
 rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
 rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
 rowWeightedSds, rowWeightedVars
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
 IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
 Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
 as.data.frame, basename, cbind, colnames, dirname, do.call,
 duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
 lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
 pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
 tapply, union, unique, unsplit, which.max, which.min
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
 I, expand.grid, unname
Welcome to Bioconductor
 Vignettes contain introductory material; view with
 'browseVignettes()'. To cite Bioconductor, see
 'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following object is masked from 'package:MatrixGenerics':
 rowMedians
The following objects are masked from 'package:matrixStats':
 anyMissing, rowMedians
RUNIT TEST PROTOCOL -- Tue Apr 11 12:01:57 2023 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
 
1 Test Suite : 
microRNAome RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
 user system elapsed 
 4.689 0.240 4.911