BioC experimental data: CHECK report for ppiData on petty

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Package 75/92 Hostname OS / Arch BUILD CHECK BUILD BIN

ppiData 0.1.14
Tony Chiang

Snapshot Date: 2011年04月06日 12:27:26 -0700 (Wed, 06 Apr 2011)

URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ppiData

Last Changed Rev: 1101 / Revision: 1510

Last Changed Date: 2009年12月05日 17:17:35 -0800 (Sat, 05 Dec 2009)

lamb2 Linux (openSUSE 11.2) / x86_64 OK OK

gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 OK OK OK

petty Mac OS X Snow Leopard (10.6.6) / i386 OK [ OK ] OK

Summary

Package: ppiData

Version: 0.1.14

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ppiData_0.1.14.tar.gz

StartedAt: 2011年04月06日 14:20:38 -0700 (2011年4月06日)

EndedAt: 2011年04月06日 14:24:23 -0700 (2011年4月06日)

EllapsedTime: 224.3 seconds

RetCode: 0

Status: OK

CheckDir: ppiData.Rcheck

Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.7-data-experiment/meat/ppiData.Rcheck'
* using R version 2.12.1 Patched (2011年01月04日 r53913)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ppiData/DESCRIPTION' ... OK
* this is package 'ppiData' version '0.1.14'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiData' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: intAct2Sys.Rd:33-35: Dropping empty section \examples
prepare_Rd: twTableAPMS.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableAPMS.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableAPMS.Rd:27-28: Dropping empty section \references
prepare_Rd: twTableY2H.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableY2H.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableY2H.Rd:27-28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

ppiData.Rcheck/00install.out:

* installing *source* package 'ppiData' ...
** R
** data
** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (ppiData)

ppiData.Rcheck/ppiData-Ex.timings:

name user system elapsed

Cagney2001BPGraph 0.025 0.001 0.026

Gavin2002BPGraph 0.002 0.000 0.002

Gavin2006bPGraph 0.001 0.001 0.002

Hazbun2003BPGraph 0.001 0.000 0.001

Ho2002BPGraph 0.002 0.000 0.002

Ito2001BPGraph 0.002 0.001 0.002

ItoCore2001BPGraph 0.002 0.000 0.002

ItoFull2001BPGraph 0.002 0.000 0.002

Krogan2004BPGraph 0.002 0.001 0.002

Krogan2006BPGraph 0.001 0.000 0.002

Tong2002BPGraph 0.002 0.001 0.002

Uetz2000BPGraph1 0.001 0.000 0.002

Uetz2000BPGraph2 0.002 0.000 0.002

Zhao2005BPGraph 0.003 0.001 0.004

bpExperimentNames 0.002 0.004 0.007

collectIntactPPIData 17.194 3.493 20.697

createBPList 0.015 0.001 0.016

intActPPIData 0.003 0.001 0.004

map2Systematic 0.002 0.000 0.002

ppipred 0.001 0.001 0.002

sWAC2Sys 0.001 0.000 0.002

stochasticBaits 0.006 0.001 0.006

tableList 0.002 0.000 0.001

twTableAPMS 0.001 0.000 0.002

twTableY2H 0.001 0.000 0.002

viableProteins 0.011 0.002 0.012

y2h 0.002 0.000 0.002

y2hSysGW 0.013 0.002 0.014