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Package 55/92 Hostname OS / Arch BUILD CHECK BUILD BIN
hmyriB36 0.99.8
Vincent Carey
Snapshot Date: 2011年04月06日 12:27:26 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/hmyriB36
Last Changed Rev: 1492 / Revision: 1510
Last Changed Date: 2011年04月03日 06:38:16 -0700 (Sun, 03 Apr 2011)
lamb2 Linux (openSUSE 11.2) / x86_64 OK [ ERROR ]
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 OK ERROR ERROR
petty Mac OS X Snow Leopard (10.6.6) / i386 OK ERROR ERROR

Summary

Package: hmyriB36
Version: 0.99.8
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings hmyriB36_0.99.8.tar.gz
StartedAt: 2011年04月06日 14:30:57 -0700 (2011年4月06日)
EndedAt: 2011年04月06日 14:31:13 -0700 (2011年4月06日)
EllapsedTime: 16.5 seconds
RetCode: 1
Status: ERROR
CheckDir: hmyriB36.Rcheck
Warnings: NA

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-data-experiment/meat/hmyriB36.Rcheck’
* using R version 2.12.2 (2011年02月25日)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hmyriB36/DESCRIPTION’ ... OK
* this is package ‘hmyriB36’ version ‘0.99.8’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘hmyriB36’ can be installed ... ERROR
Installation failed.
See ‘/loc/home/biocbuild/bbs-2.7-data-experiment/meat/hmyriB36.Rcheck/00install.out’ for details.

hmyriB36.Rcheck/00install.out:

* installing *source* package ‘hmyriB36’ ...
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
 Vignettes contain introductory material. To view, type
 'openVignette()'. To cite Bioconductor, see
 'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GGBase
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from 'package:Biobase':
 updateObject
The following object(s) are masked from 'package:base':
 Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
 pmin.int, rbind, rep.int, table
Loading required package: rtracklayer
Loading required package: RCurl
Loading required package: bitops
Loading required package: org.Hs.eg.db
Loading required package: GenomicRanges
Loading required package: ff
Loading required package: tools
Loading required package: bit
Loading package bit1.1-6
package:bit (c) 2008/2009 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != == 
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: 'bit'
The following object(s) are masked from 'package:base':
 xor
Loading package ff2.2-1
- getOption("fftempdir")=="/tmp/RtmpUH2jvB"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package ff
Attaching package: 'ff'
The following object(s) are masked from 'package:utils':
 write.csv, write.csv2
The following object(s) are masked from 'package:base':
 is.factor, is.ordered
Error : object ‘getSS’ is not exported by 'namespace:GGtools'
ERROR: lazy loading failed for package ‘hmyriB36’
* removing ‘/loc/home/biocbuild/bbs-2.7-data-experiment/meat/hmyriB36.Rcheck/hmyriB36’

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