Warning: unknown option '--keep-empty-dirs'
* checking for file 'ceu1kg/DESCRIPTION' ... OK
* preparing 'ceu1kg':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: GGBase
Loading required package: Biobase
Welcome to Bioconductor
 Vignettes contain introductory material. To view, type
 'openVignette()'. To cite Bioconductor, see
 'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: GGtools
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from 'package:Biobase':
 updateObject
The following object(s) are masked from 'package:base':
 Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
 pmin.int, rbind, rep.int, table
Loading required package: rtracklayer
Loading required package: RCurl
Loading required package: bitops
Loading required package: org.Hs.eg.db
Loading required package: GenomicRanges
Loading required package: ff
Loading required package: tools
Loading required package: bit
Loading package bit1.1-6
package:bit (c) 2008/2009 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != == 
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: 'bit'
The following object(s) are masked from 'package:base':
 xor
Loading package ff2.2-1
- getOption("fftempdir")=="D:/biocbld/bbs-2.7-data-experiment/tmpdir/RtmpP0KhAb"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==42928701.44 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==2146435072 -- consider a different value for tuning your system
Attaching package ff
Attaching package: 'ff'
The following object(s) are masked from 'package:utils':
 write.csv, write.csv2
The following object(s) are masked from 'package:base':
 is.factor, is.ordered
Loading required package: snpStats
Error: processing vignette 'ceu1kg.Rnw' failed with diagnostics:
unable to find required package "snpStats"
In addition: Warning message:
In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
 there is no package called 'snpStats'
Execution halted