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Package 16/92 Hostname OS / Arch BUILD CHECK BUILD BIN
ccTutorial 1.0.17
Joern Toedling
Snapshot Date: 2011年04月06日 12:27:26 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ccTutorial
Last Changed Rev: 1044 / Revision: 1510
Last Changed Date: 2009年10月13日 18:55:23 -0700 (Tue, 13 Oct 2009)
lamb2 Linux (openSUSE 11.2) / x86_64 OK [ OK ]
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 OK OK OK
petty Mac OS X Snow Leopard (10.6.6) / i386 OK OK OK

Summary

Package: ccTutorial
Version: 1.0.17
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings ccTutorial_1.0.17.tar.gz
StartedAt: 2011年04月06日 14:07:51 -0700 (2011年4月06日)
EndedAt: 2011年04月06日 14:18:52 -0700 (2011年4月06日)
EllapsedTime: 660.7 seconds
RetCode: 0
Status: OK
CheckDir: ccTutorial.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-data-experiment/meat/ccTutorial.Rcheck’
* using R version 2.12.2 (2011年02月25日)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ccTutorial/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ccTutorial’ version ‘1.0.17’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘ccTutorial’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

ccTutorial.Rcheck/00install.out:

* installing *source* package ‘ccTutorial’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
 Vignettes contain introductory material. To view, type
 'openVignette()'. To cite Bioconductor, see
 'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: RColorBrewer
Loading required package: limma
Loading required package: Matrix
Loading required package: lattice
Attaching package: 'Matrix'
The following object(s) are masked from 'package:base':
 det
Loading required package: grid
Attaching package: 'affy'
The following object(s) are masked from 'package:Ringo':
 probes
Loading required package: graph
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: SparseM
Package SparseM (0.86) loaded.
	 To cite, see citation("SparseM")
Attaching package: 'SparseM'
The following object(s) are masked from 'package:base':
 backsolve
groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (ccTutorial)

ccTutorial.Rcheck/ccTutorial-Ex.timings:

name user system elapsed
X 30.022 0.252 30.273
arrayGenesToProbeSets 0.052 0.004 0.053
barreraExpressionX 0.156 0.004 0.160
chersX 2.248 0.028 2.277
mm9g2p 0.936 0.008 0.947
mm9gene2GO 0.040 0.000 0.042
mm9genes 0.100 0.004 0.103
probeAnno 0 0 0

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