* checking for working pdflatex ... OK * using log directory '/Users/biocbuild/bbs-2.2-data-experiment/meat/ppiData.Rcheck' * using R version 2.7.2 (2008年08月25日) * using session charset: ASCII * checking for file 'ppiData/DESCRIPTION' ... OK * this is package 'ppiData' version '0.1.13' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'ppiData' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating ppiData-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating ppiData-manual.tex ... OK * checking ppiData-manual.tex using pdflatex ... OK
ppiData.Rcheck/00install.out:
* Installing *source* package 'ppiData' ... ** R ** data ** moving datasets to lazyload DB ** inst ** preparing package for lazy loading Loading required package: Rgraphviz Loading required package: graph Loading required package: grid ** help Note: removing empty section \examples Note: removing empty section \source Note: removing empty section \details Note: removing empty section \references Note: removing empty section \source Note: removing empty section \details Note: removing empty section \references >>> Building/Updating help pages for package 'ppiData' Formats: text html latex example Cagney2001BPGraph text html latex example Gavin2002BPGraph text html latex example Gavin2006bPGraph text html latex example Hazbun2003BPGraph text html latex example Ho2002BPGraph text html latex example Ito2001BPGraph text html latex example ItoCore2001BPGraph text html latex example ItoFull2001BPGraph text html latex example Krogan2004BPGraph text html latex example Krogan2006BPGraph text html latex example Tong2002BPGraph text html latex example Uetz2000BPGraph1 text html latex example Uetz2000BPGraph2 text html latex example Zhao2005BPGraph text html latex example bpExperimentNames text html latex example collectIntactPPIData text html latex example createBPList text html latex example intAct2Sys text html latex intActPPIData text html latex example map2Systematic text html latex example map2Systematic2 text html latex ppipred text html latex example proteinProperty text html latex example sWAC2Sys text html latex example stochasticBaits text html latex example tableList text html latex example twTableAPMS text html latex example twTableY2H text html latex example viableProteins text html latex example y2h text html latex example y2hSysGW text html latex example ** building package indices ... * DONE (ppiData)