* checking for file 'cgdv17/DESCRIPTION' ... OK
* preparing 'cgdv17':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: VariantAnnotation
Loading required package: GenomicRanges
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following object(s) are masked from 'package:stats':
 xtabs
The following object(s) are masked from 'package:base':
 Filter, Find, Map, Position, Reduce, anyDuplicated, cbind,
 colnames, duplicated, eval, get, intersect, lapply, mapply, mget,
 order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int,
 rownames, sapply, setdiff, table, tapply, union, unique
Loading required package: IRanges
Loading required package: Rsamtools
Loading required package: Biostrings
Loading required package: org.Hs.eg.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
 Vignettes contain introductory material; view with
 'browseVignettes()'. To cite Bioconductor, see
 'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following object(s) are masked from 'package:VariantAnnotation':
 samples
Loading required package: DBI
Loading required package: GGtools
Loading required package: stats4
Loading required package: GGBase
Loading required package: snpStats
Loading required package: survival
Loading required package: splines
Loading required package: Matrix
Loading required package: lattice
Attaching package: 'Matrix'
The following object(s) are masked from 'package:IRanges':
 expand
Attaching package: 'GGtools'
The following object(s) are masked from 'package:stats':
 getCall
Loading required package: TxDb.Hsapiens.UCSC.hg19.knownGene
Loading required package: GenomicFeatures
Loading required package: parallel
Error: processing vignette 'cgdv.Rnw' failed with diagnostics:
 chunk 9 (label = lkco) 
Error in thisrd[IRanges::overlapsAny(ranges(thisrd), ranges(delim))] : 
 error in evaluating the argument 'i' in selecting a method for function '[': Error: 'overlapsAny' is not an exported object from 'namespace:IRanges'
Execution halted