* using log directory 'D:/biocbld/bbs-2.11-data-experiment/meat/ccTutorial.Rcheck' * using R version 2.15.3 (2013年03月01日) * using platform: i386-w64-mingw32 (32-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ccTutorial/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ccTutorial' version '1.0.22' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'ccTutorial' can be installed ... OK * checking installed package size ... NOTE installed size is 790.3Mb sub-directories of 1Mb or more: PairData 448.5Mb data 77.8Mb doc 5.4Mb exonerateData 202.3Mb expression 49.9Mb vignettes 6.3Mb * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... NOTE The following files should probably not be installed: 'Makefile', 'ccTutorial.tex', 'ccTutorialSupplement.tex' Consider the use of a .Rinstignore file: see 'Writing R Extensions', or move the vignette sources from 'inst/doc' to 'vignettes'. * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed X 19.78 0.12 20.19 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed X 21.59 0.14 21.73 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignettes ... SKIPPED * checking PDF version of manual ... OK NOTE: There were 2 notes. See 'D:/biocbld/bbs-2.11-data-experiment/meat/ccTutorial.Rcheck/00check.log' for details.
ccTutorial.Rcheck/00install.out:
install for i386 * installing *source* package 'ccTutorial' ... ** R ** data ** inst ** preparing package for lazy loading groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built. ** help *** installing help indices ** building package indices ** installing vignettes 'ccTutorial.Rnw' 'ccTutorialSupplement.Rnw' ** testing if installed package can be loaded groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built. install for x64 * installing *source* package 'ccTutorial' ... ** testing if installed package can be loaded groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built. * MD5 sums packaged installation of 'ccTutorial' as ccTutorial_1.0.22.zip * DONE (ccTutorial)