* using log directory ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/SpikeInSubset.Rcheck’ * using R version 2.15.3 (2013年03月01日) * using platform: x86_64-unknown-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SpikeInSubset/DESCRIPTION’ ... OK * this is package ‘SpikeInSubset’ version ‘1.2.12’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package ‘SpikeInSubset’ can be installed ... WARNING Found the following significant warnings: Warning: /loc/home/biocbuild/bbs-2.11-data-experiment/meat/SpikeInSubset.Rcheck/00_pkg_src/SpikeInSubset/man/xhyb.Rd: docType ‘instance’ is unrecognized See ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/SpikeInSubset.Rcheck/00install.out’ for details. * checking installed package size ... NOTE installed size is 20.5Mb sub-directories of 1Mb or more: data 20.4Mb * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING prepare_Rd: xhyb.Rd: docType ‘instance’ is unrecognized * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress hgu133a.spikein.xhyb.rda 12Kb 2Kb gzip mas133.rda 2.2Mb 1010Kb xz mas95.rda 1.3Mb 573Kb xz rma133.rda 2.2Mb 894Kb xz rma95.rda 1.3Mb 522Kb xz spikein133.rda 7.3Mb 4.4Mb xz spikein95.rda 6.1Mb 3.5Mb xz * checking examples ... NONE * checking PDF version of manual ... OK WARNING: There were 3 warnings. NOTE: There was 1 note. See ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/SpikeInSubset.Rcheck/00check.log’ for details.
SpikeInSubset.Rcheck/00install.out:
* installing *source* package ‘SpikeInSubset’ ... ** R ** data ** preparing package for lazy loading ** help Warning: /loc/home/biocbuild/bbs-2.11-data-experiment/meat/SpikeInSubset.Rcheck/00_pkg_src/SpikeInSubset/man/xhyb.Rd: docType ‘instance’ is unrecognized *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (SpikeInSubset)