* using log directory 'E:/biocbld/bbs-2.10-data-experiment/meat/leeBamViews.Rcheck' * using R version 2.15.1 (2012年06月22日) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'leeBamViews/DESCRIPTION' ... OK * this is package 'leeBamViews' version '0.99.19' * checking package namespace information ... OK * checking package dependencies ... NOTE Package which this enhances but not available for checking: 'multicore' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'leeBamViews' can be installed ... OK * checking installed package size ... NOTE installed size is 11.3Mb sub-directories of 1Mb or more: bam 10.1Mb * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... NOTE Non-standard license specification: Artistic 2.0 Standardizable: TRUE Standardized license specification: Artistic-2.0 * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' Running 'lbvtest.R' OK ** running tests for arch 'x64' Running 'lbvtest.R' OK * checking for unstated dependencies in vignettes ... NOTE 'library' or 'require' call not declared from: 'IRanges' * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignettes ... SKIPPED * checking PDF version of manual ... OK NOTE: There were 4 notes. See 'E:/biocbld/bbs-2.10-data-experiment/meat/leeBamViews.Rcheck/00check.log' for details.
leeBamViews.Rcheck/00install.out:
install for i386 * installing *source* package 'leeBamViews' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes 'leeViews.Rnw' ** testing if installed package can be loaded install for x64 * installing *source* package 'leeBamViews' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'leeBamViews' as leeBamViews_0.99.19.zip * DONE (leeBamViews)