* using log directory ‘/loc/home/biocbuild/bbs-2.10-data-experiment/meat/hapmapsnp5.Rcheck’
* using R version 2.15.1 (2012年06月22日)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hapmapsnp5/DESCRIPTION’ ... OK
* this is package ‘hapmapsnp5’ version ‘1.3.6’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘hapmapsnp5’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 134.6Mb
sub-directories of 1Mb or more:
celFiles 134.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘hapmapsnp5/R/zzz.R’:
.onLoad calls:
message(paste("/-------------------------------------------\\", "| SAMPLE HAPMAP SNP 5.0 |", "|-------------------------------------------|", "| Data obtained from http://www.hapmap.org |", "| This package is meant to be used only for |", "| demonstration of BioConductor packages. |", "| Access http://www.hapmap.org for details. |", "|-------------------------------------------|", "| The contents of this package are provided |", "| in good faith and the maintainer does not |", "| warrant their accuracy. |", "\\-------------------------------------------/", sep = "\n"))
Package startup functions should use ‘packageStartupMessage’ to
generate messages.
See section ‘Good practice’ in ?.onAttach.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/loc/home/biocbuild/bbs-2.10-data-experiment/meat/hapmapsnp5.Rcheck/00check.log’
for details.
hapmapsnp5.Rcheck/00install.out:
* installing *source* package ‘hapmapsnp5’ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded /-------------------------------------------\ | SAMPLE HAPMAP SNP 5.0 | |-------------------------------------------| | Data obtained from http://www.hapmap.org | | This package is meant to be used only for | | demonstration of BioConductor packages. | | Access http://www.hapmap.org for details. | |-------------------------------------------| | The contents of this package are provided | | in good faith and the maintainer does not | | warrant their accuracy. | \-------------------------------------------/ * DONE (hapmapsnp5)
hapmapsnp5.Rcheck/hapmapsnp5-Ex.timings: