* using log directory ‘/loc/home/biocbuild/bbs-2.10-data-experiment/meat/dsQTL.Rcheck’ * using R version 2.15.1 (2012年06月22日) * using platform: x86_64-unknown-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘dsQTL/DESCRIPTION’ ... OK * this is package ‘dsQTL’ version ‘0.0.18’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package ‘dsQTL’ can be installed ... OK * checking installed package size ... NOTE installed size is 275.4Mb sub-directories of 1Mb or more: data 261.4Mb parts 13.7Mb * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE getSNPlocs: no visible binding for global variable ‘ch2locs’ getSNPlocs: no visible binding for global variable ‘ch17locs’ * checking Rd files ... NOTE prepare_Rd: dsQTL-package.Rd:53-54: Dropping empty section \seealso prepare_Rd: dsQTL-package.Rd:55-56: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented data sets: ‘ndhs17’ All user-level objects in a package should have documentation entries. See the chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... NOTE ‘library’ or ‘require’ call not declared from: ‘GGtools’ * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignettes ... SKIPPED * checking PDF version of manual ... OK WARNING: There was 1 warning. NOTE: There were 4 notes. See ‘/loc/home/biocbuild/bbs-2.10-data-experiment/meat/dsQTL.Rcheck/00check.log’ for details.
dsQTL.Rcheck/00install.out:
* installing *source* package ‘dsQTL’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘dsq.Rnw’ ** testing if installed package can be loaded * DONE (dsQTL)