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Package 19/122 Hostname OS / Arch BUILD CHECK BUILD BIN
CCl4 1.0.12
Audrey Kauffmann
Snapshot Date: 2012年09月23日 10:15:26 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/CCl4
Last Changed Rev: 2037 / Revision: 2159
Last Changed Date: 2012年03月30日 15:20:09 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64 OK WARNINGS
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 OK [ WARNINGS ] OK
petty Mac OS X Leopard (10.5.8) / i386 OK WARNINGS OK

Summary

Package: CCl4
Version: 1.0.12
Command: rm -rf CCl4.buildbin-libdir && mkdir CCl4.buildbin-libdir && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CCl4.buildbin-libdir CCl4_1.0.12.tar.gz>CCl4-install.out 2>&1 && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD check --library=CCl4.buildbin-libdir --install="check:CCl4-install.out" --force-multiarch --no-vignettes --timings CCl4_1.0.12.tar.gz && mv CCl4.buildbin-libdir/* CCl4.Rcheck/ && rmdir CCl4.buildbin-libdir
StartedAt: 2012年09月23日 12:35:15 -0700 (2012年9月23日)
EndedAt: 2012年09月23日 12:40:42 -0700 (2012年9月23日)
EllapsedTime: 326.7 seconds
RetCode: 0
Status: WARNINGS
CheckDir: CCl4.Rcheck
Warnings: 1

Command output

* using log directory 'E:/biocbld/bbs-2.10-data-experiment/meat/CCl4.Rcheck'
* using R version 2.15.1 (2012年06月22日)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CCl4/DESCRIPTION' ... OK
* this is package 'CCl4' version '1.0.12'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'CCl4' can be installed ... OK
* checking installed package size ... NOTE
 installed size is 298.6Mb
 sub-directories of 1Mb or more:
 data 6.2Mb
 extdata 292.2Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
 
 Note: significantly better compression could be obtained
 by using R CMD build --resave-data
 old_size new_size compress
 CCl4.RData 3.3Mb 2.1Mb xz
 CCl4_RGList.RData 2.9Mb 2.0Mb xz
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
 Running 'validDataFiles.R'
 Comparing 'validDataFiles.Rout' to 'validDataFiles.Rout.save' ...5,17d4
< Attaching package: 'BiocGenerics'
< 
< The following object(s) are masked from 'package:stats':
< 
< xtabs
< 
< The following object(s) are masked from 'package:base':
< 
< Filter, Find, Map, Position, Reduce, anyDuplicated, cbind,
< colnames, duplicated, eval, get, intersect, lapply, mapply, mget,
< order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int,
< rownames, sapply, setdiff, table, tapply, union, unique
< 
20,22c7,9
< Vignettes contain introductory material; view with
< 'browseVignettes()'. To cite Bioconductor, see
< 'citation("Biobase")', and for packages 'citation("pkgname")'.
---
> Vignettes contain introductory material. To view, type
> 'openVignette()'. To cite Bioconductor, see
> 'citation("Biobase")' and for packages 'citation(pkgname)'.
 OK
** running tests for arch 'x64'
 Running 'validDataFiles.R'
 Comparing 'validDataFiles.Rout' to 'validDataFiles.Rout.save' ...5,17d4
< Attaching package: 'BiocGenerics'
< 
< The following object(s) are masked from 'package:stats':
< 
< xtabs
< 
< The following object(s) are masked from 'package:base':
< 
< Filter, Find, Map, Position, Reduce, anyDuplicated, cbind,
< colnames, duplicated, eval, get, intersect, lapply, mapply, mget,
< order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int,
< rownames, sapply, setdiff, table, tapply, union, unique
< 
20,22c7,9
< Vignettes contain introductory material; view with
< 'browseVignettes()'. To cite Bioconductor, see
< 'citation("Biobase")', and for packages 'citation("pkgname")'.
---
> Vignettes contain introductory material. To view, type
> 'openVignette()'. To cite Bioconductor, see
> 'citation("Biobase")' and for packages 'citation(pkgname)'.
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There was 1 note.
See
 'E:/biocbld/bbs-2.10-data-experiment/meat/CCl4.Rcheck/00check.log'
for details.

CCl4.Rcheck/00install.out:

install for i386
* installing *source* package 'CCl4' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
 'CCl4.Rnw' 
** testing if installed package can be loaded
install for x64
* installing *source* package 'CCl4' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CCl4' as CCl4_1.0.12.zip
* DONE (CCl4)

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