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* checking for working latex ... OK * using log directory 'D:/biocbld/bbs-2.0-data-experiment/meat/hgu2beta7.Rcheck' * using R version 2.5.1 (2007年06月27日) * checking for file 'hgu2beta7/DESCRIPTION' ... OK * this is package 'hgu2beta7' version '1.2.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'hgu2beta7' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... WARNING Subdirectory 'data' contains no data sets. * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... WARNING Error in `parent.env<-`(`*tmp*`, value = NULL) : use of NULL environment is defunct Execution halted See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... WARNING Error in `parent.env<-`(`*tmp*`, value = NULL) : use of NULL environment is defunct Execution halted See section 'Generic functions and methods' of the 'Writing R Extensions' manual. * checking replacement functions ... OK * checking foreign function calls ... WARNING Error in `parent.env<-`(`*tmp*`, value = NULL) : use of NULL environment is defunct Execution halted See the chapter 'System and foreign language interfaces' of the 'Writing R Extensions' manual. * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Error in `parent.env<-`(`*tmp*`, value = NULL) : use of NULL environment is defunct Execution halted * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating hgu2beta7-Ex.R ... OK * checking examples ... ERROR Running examples in 'hgu2beta7-Ex.R' failed. The error most likely occurred in: > ### * hgu2beta7ACCNUM > > flush(stderr()); flush(stdout()) > > ### Name: hgu2beta7ACCNUM > ### Title: Mappings between probe identifiers and manufacturer or user > ### provided identifiers > ### Aliases: hgu2beta7ACCNUM > ### Keywords: datasets > > ### ** Examples > > # Convert to a list > xx <- as.list(hgu2beta7ACCNUM) Error in `parent.env<-`(`*tmp*`, value = NULL) : use of NULL environment is defunct Execution halted
hgu2beta7.Rcheck/00install.out:
installing R.css in D:/biocbld/bbs-2.0-data-experiment/meat/hgu2beta7.Rcheck ---------- Making package hgu2beta7 ------------ adding build stamp to DESCRIPTION installing R files installing data files installing man source files installing indices installing help >>> Building/Updating help pages for package 'hgu2beta7' Formats: text html latex example chm hgu2beta7 text html latex chm hgu2beta7ACCNUM text html latex example chm hgu2beta7CHR text html latex example chm hgu2beta7CHRLENGTHS text html latex example chm hgu2beta7CHRLOC text html latex example chm hgu2beta7ENZYME text html latex example chm hgu2beta7ENZYME2PROBE text html latex example chm hgu2beta7GENENAME text html latex example chm hgu2beta7GO text html latex example chm hgu2beta7GO2ALLPROBES text html latex example chm hgu2beta7GO2PROBE text html latex example chm hgu2beta7GRIF text html latex example chm hgu2beta7LOCUSID text html latex example chm hgu2beta7MAP text html latex example chm hgu2beta7OMIM text html latex example chm hgu2beta7ORGANISM text html latex example chm hgu2beta7PATH text html latex example chm hgu2beta7PATH2PROBE text html latex example chm hgu2beta7PMID text html latex example chm hgu2beta7PMID2PROBE text html latex example chm hgu2beta7QC text html latex chm hgu2beta7REFSEQ text html latex example chm hgu2beta7SUMFUNC text html latex example chm hgu2beta7SYMBOL text html latex example chm hgu2beta7UNIGENE text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\bbs-2.0-data-experiment\meat\hgu2beta7.Rcheck00円_pkg_src\hgu2beta7\chm\hgu2beta7.chm Compile time: 0 minutes, 0 seconds 26 Topics 51 Local links 30 Internet links 1 Graphic Created d:\biocbld\bbs-2.0-data-experiment\meat\hgu2beta7.Rcheck00円_pkg_src\hgu2beta7\chm\hgu2beta7.chm, 43,106 bytes Compression decreased file by 37,922 bytes. adding MD5 sums * DONE (hgu2beta7)