Skip to content

@cmungall cmungall Follow

More

@cmungall

cmungall

Follow

View cmungall's full-sized avatar

💭

...

Chris Mungall cmungall

💭

...

Follow

Computer Research Scientist at Berkeley Lab. Interests: AI / Ontologies / Bioinformatics. Projects: GO, Monarch, Alliance, OBOFoundry, NMDC

410 followers · 48 following

Lawrence Berkeley National Laboratory
Berkeley, CA
http://berkeleybop.org/people/chris-mungall
in/chrismungall
@Cmungall@genomic.social
https://bsky.app/profile/cmungall.bsky.social
@chrismungall

Achievements

Achievement: Pair Extraordinairex4 Achievement: Starstruckx3 Achievement: Galaxy Brain Achievement: YOLO Achievement: Quickdraw Achievement: Arctic Code Vault Contributor Achievement: Pull Sharkx4

Achievements

Achievement: Pair Extraordinairex4 Achievement: Starstruckx3 Achievement: Galaxy Brain Achievement: YOLO Achievement: Quickdraw Achievement: Arctic Code Vault Contributor Achievement: Pull Sharkx4

Highlights

Pro

Organizations

@bioperl @GMOD @berkeleybop @obophenotype @owlcs @monarch-initiative @VirtualFlyBrain @ga4gh @Planteome @geneontology @CTDbase @globalbioticinteractions @MatchmakerExchange @owlcollab @EnvironmentOntology @phenopackets @evoldoers @NCATS-Tangerine @linkml @ai4curation

More

cmungall /README.md

Chris Mungall (@cmungall)

Computer Research Scientist at Berkeley Lab.

Interests: AI / Ontologies / Bioinformatics. Projects: GO, Monarch, Alliance, OBOFoundry, NMDC

GitHub GitHub Sponsors Twitter @chrismungall PGP/GPG Key

GPT-3 Summary

TODO

Pinned Loading

obophenotype/uberon obophenotype/uberon Public

An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

Emacs Lisp 147 36
geneontology/go-ontology geneontology/go-ontology Public

Source ontology files for the Gene Ontology

Makefile 240 47
geneontology/obographs geneontology/obographs Public

Basic and Advanced OBO Graphs: specification and reference implementation

Java 68 15
evoldoers/biomake evoldoers/biomake Public

GNU-Make-like utility for managing builds and complex workflows

Prolog 110 9
monarch-initiative/ontogpt monarch-initiative/ontogpt Public

LLM-based ontological extraction tools, including SPIRES

Jupyter Notebook 780 103
linkml/linkml linkml/linkml Public

Linked Open Data Modeling Language

Python 445 147