Sequence Ontology Publications
Intelligently Designed Ontology Alignment: A Case Study from the Sequence Ontology
Michael Sinclair, Michael Bada, and Karen Eilbeck
ISMB Bio-ontologies track conference proceeding 2018
Efforts toward a More Consistent and Interoperable Sequence Ontology
Michael Bada and Karen Eilbeck
Conference Proceeding ICBO 2012
Toward a Richer Representation of Sequence Variation in the Sequence Ontology
Michael Bada and Karen Eilbeck
Annotation, Interpretation and Management of Mutations. A workshop at ECCB10.
A standard variation file format for human genome sequences
Reese MG, Moore B, Batchelor C, Salas F, Cunningham F, Marth GT, Stein L, Flicek P, Yandell M, Eilbeck K
Genome Biology 2010, 11:R88
SOBA: sequence ontology bioinformatics analysis
Moore B, Fan G, Eilbeck K
Nucl Acids Res 2010, 38(suppl 2)
Evolution of the Sequence Ontology terms and relationships
Mungall, C. J. Batchelor C. Eilbeck K.
J Biomed Inform. 2010 Mar 10
J Biomed Inform. 2010 Mar 10
Quantitative Measures for the Management and Comparison of Annotated Genomes.
Eilbeck K., Moore B., Holt C., Yandell M.
BMC Bioinformatics 2009, 10:67
BMC Bioinformatics 2009, 10:67
The Protein Feature Ontology: a tool for the unification of
protein feature annotations.
Reeves G.A., Eilbeck K., Magrane M., O’Donovan C.,
Montecchi-Palazzi L., Harris M.A., Orchard S., Jimenez R.C., Prlic
A., Hubbard T.J., Hermjakob H., Thornton J.M.
Bioinformatics. 2008 Dec 1; 24(23):2767-72
Montecchi-Palazzi L., Harris M.A., Orchard S., Jimenez R.C., Prlic
A., Hubbard T.J., Hermjakob H., Thornton J.M.
Bioinformatics. 2008 Dec 1; 24(23):2767-72
A Chado case study: an ontology-based modular schema for
representing genome-associated biological information
Christopher J. Mungall 1, David B. Emmert, and The FlyBase Consortium.
Bioinformatics 2007 23(13):i337-i346
The Sequence Ontology: A tool for the unification of genome
annotations.
Eilbeck K., Lewis S., Mungall C.J., Yandell M., Stein
L., Durbin R., Ashburner M.
Genome Biology (2005) 6:R44
Genome Biology (2005) 6:R44
Sequence Ontology Annotation Guide.
Eilbeck K. and Lewis S.
Comparative and Functional Genomics (2004) 5:642-647
Comparative and Functional Genomics (2004) 5:642-647