PROGRAM
Proceedings (pdf) revised from paper is now available -> HR pdf High resol. (76MB) -> pdf
10:00-10:20
Opening Talk
Koji KAYA, RIKEN
(Session Chair: Shu TAKAGI, RIKEN/University of Tokyo)
10:20-11:10
ISLiM Keynote: Current status of software development in ISLiM and its future
Ryutaro HIMENO, RIKEN
11:10-12:00
What can Multiscale Models do for Precision Medicine?
Grace Peng, National Institute of Health
12:00-13:00
Lunch break
(Session Chair: Ryutaro HIMENO, RIKEN)
13:00-13:50
Development of Multiscale Thrombosis Simulator
Shu TAKAGI, RIKEN/University of Tokyo
13:50-14:40
Multiscale simulations of tumor angiogenesis with therapeutic applications
Aleksander Popel, Johns Hopkins University
14:40-15:10
Coffee break
15:10-16:00
Multi-scale, multi-physics heart simulator "UT-Heart" for heart research
Seiryo SUGIURA, University of Tokyo
(Session Chair: Hideo YOKOTA, RIKEN)
16:00-16:50
Is eukaryotic cell biology ready for supercomputing? A perspective from the Virtual Cell project
Ion I. Moraru, University of Connecticut Health Center
December 4 (Tue)
(Session Chair: Makoto TAIJI, RIKEN)
10:00-10:50
K computer Keynote: Real Peta-scale computing, stairway to Exa
Motoi OKUDA, Fujitsu
10:50-11:40
Optimization of Life-Science applications on the K computer
Yousuke OHNO, RIKEN
11:40-12:30
Large Scale Biomolecular Modeling with IBM Blue Gene
Ruhong Zhou, IBM
12:30-13:30
Lunch break
(Session Chair: Ryutaro HIMENO, RIKEN)
13:30-13:55
Research activity of Cell Scale Simulation Team
Hideo YOKOTA, RIKEN
13:55-14:20
Dissection of regulatory mechanisms for metabolic systems by quantitative imaging mass spectrometry
Makoto SUEMATSU, Keio University
(Session Chair: Shin ISHII, Kyoto University)
14:20-15:10
Closing the loop: simulation of the whole sensory-motor neural network in action
Kenji DOYA, Okinawa Institute of Science and Technology (OIST)
15:10-15:40
Coffee break
15:40-16:30
Multi-scale modelling of the motor system underlying goal-directed behaviour in a vertebrate model organism
Sten Grillner, Karolinska Institutet
16:30-17:20
Brain-scale neuronal network simulations on K
Markus Diesmann, Forschungszentrum Jülich
(17:30-19:00)
Social (Konshin-kai, optional)
December 5 (Wed)
(Session Chair: Akinori KIDERA, RIKEN/Yokohama City University)
10:00-11:00
Molecular machines and nuclear processes studied by coarse-grained molecular simulations
Shoji TAKADA, Kyoto University
11:00-12:00
Biomolecular simulations under cellular environment
Yuji SUGITA, RIKEN
12:00-13:10
Lunch break
(Session Chair: Mitsunori IKEGUCHI, Yokohama City University)
13:10-14:10
Large-scale simulations of biomolecular machines
Karissa Sanbonmatsu, Los Alamos National Laboratory
14:10-15:10
Use of Modeling and Simulation in Drug Discovery and Development: It is all about the Questions
Sandra R. B. Allerheiligen, Merck
15:10-15:40
Coffee break
(Session Chair: Satoru MIYANO, University of Tokyo)
15:40-16:05
Supercomputing for Next-Generation Cancer Research
Satoru MIYANO, University of Tokyo
16:05-16:30
Large-scale protein-protein interaction network prediction by an exhaustive rigid docking system MEGADOCK
Yutaka AKIYAMA, Tokyo Institute of Technology
(Session Chair: Yutaka AKIYAMA, Tokyo Institute of Technology)
16:30-16:55
Supercomputing accelerates genomic medicine
Tatsuhiko TSUNODA, RIKEN
16:55-17:20
Towards efficient improvement of transcriptional circuit models by Life Science Data Assimilation System (LiSDAS)
Tomoyuki HIGUCHI, Institute of Statistical Mathematics
17:20-17:30
Closing Talk
Ryutaro HIMENO, RIKEN
