CGD Paper


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Hogues H, Lavoie H, Sellam A, Mangos M, Roemer T, Purisima E, Nantel A, Whiteway M (2008) Transcription factor substitution during the evolution of fungal ribosome regulation. Mol Cell 29(5):552-62
Pubmed Entry Reference LINKOUT Data


Abstract:Coordinated ribosomal protein (RP) gene expression is crucial for cellular viability, but the transcriptional network controlling this regulon has only been well characterized in the yeast Saccharomyces cerevisiae. We have used whole-genome transcriptional and location profiling to establish that, in Candida albicans, the RP regulon is controlled by the Myb domain protein Tbf1 working in conjunction with Cbf1. These two factors bind both the promoters of RP genes and the rDNA locus; Tbf1 activates transcription at these loci and is essential. Orthologs of Tbf1 bind TTAGGG telomeric repeats in most eukaryotes, and TTAGGG cis-elements are present upstream of RP genes in plants and fungi, suggesting that Tbf1 was involved in both functions in ancestral eukaryotes. In all Hemiascomycetes, Rap1 substituted Tbf1 at telomeres and, in the S. cerevisiae lineage, this substitution also occurred independently at RP genes, illustrating the extreme adaptability and flexibility of transcriptional regulatory networks.
Status: Published Type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't PubMed ID: 18342603


Topics addressed in this paper
There are 59 different genes addressed in this paper.

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Topics
Genes linked to topics(#1-10)
C1_10350C
(C. albicans)
C1_10730W
(C. albicans)
C1_14200W
(C. albicans)
C3_00640W
(C. albicans)
C3_04690C
(C. albicans)
C7_01000C
(C. albicans)
CBF1
(C. albicans)
CDA2
(C. albicans)
CFL5
(C. albicans)
CRP1
(C. albicans)
DNA/RNA Sequence Features
Function/Process








Fungal Related Genes/Proteins








Genomic co-immunoprecipitation study








Non-Fungal Related Genes/Proteins








Protein Domains/ Motifs








Protein-Nucleic Acid Interactions








Regulatory Role








Strains/Constructs








Transcriptional Regulation

Topics
Genes linked to topics(#11-20)
CR_07470W
(C. albicans)
CTA2
(C. albicans)
DRS1
(C. albicans)
ECM17
(C. albicans)
KIN2
(C. albicans)
MED5
(C. albicans)
MET3
(C. albicans)
PGA56
(C. albicans)
PGA58
(C. albicans)
PGA62
(C. albicans)
DNA/RNA Sequence Features
Transcriptional Regulation

Topics
Genes linked to topics(#21-30)
PLB3
(C. albicans)
PRE8
(C. albicans)
RBT5
(C. albicans)
RCT1
(C. albicans)
RDN18
(C. albicans)
RDN25
(C. albicans)
RPL11
(C. albicans)
RPL12
(C. albicans)
RPL13
(C. albicans)
RPL14
(C. albicans)
Candida dubliniensis








Candida tropicalis








DNA/RNA Sequence Features
Fungal Related Genes/Proteins








RNA Levels and Processing







Transcriptional Regulation
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  • To go to the Locus page for a gene, click on the gene name.

Topics
Genes linked to topics(#31-40)
RPL15A
(C. albicans)
RPL18
(C. albicans)
RPL24A
(C. albicans)
RPL30
(C. albicans)
RPL40B
(C. albicans)
RPP0
(C. albicans)
RPP1A
(C. albicans)
RPP1B
(C. albicans)
RPP2A
(C. albicans)
RPS12
(C. albicans)
Alias






Candida dubliniensis






Candida tropicalis






DNA/RNA Sequence Features
Fungal Related Genes/Proteins






Transcriptional Regulation

Topics
Genes linked to topics(#41-50)
RPS14B
(C. albicans)
RPS15
(C. albicans)
RPS16A
(C. albicans)
RPS20
(C. albicans)
RPS21
(C. albicans)
RPS21B
(C. albicans)
RPS24
(C. albicans)
RPS25B
(C. albicans)
RPS4A
(C. albicans)
SAP10
(C. albicans)
Candida dubliniensis







Candida tropicalis







DNA/RNA Sequence Features
Fungal Related Genes/Proteins







Transcriptional Regulation

Topics
Genes linked to topics(#51-59)
SEC65
(C. albicans)
SEF1
(C. albicans)
SUA71
(C. albicans)
TAR1
(C. albicans)
TBF1
(C. albicans)
TCC1
(C. albicans)
TFB3
(C. albicans)
orf19.5372
(C. albicans)
orf19.632
(C. albicans)
DNA/RNA Sequence Features
Function/Process







Fungal Related Genes/Proteins







Genomic co-immunoprecipitation study







Genomic expression study







Mutants/Phenotypes







Non-Fungal Related Genes/Proteins







Protein Domains/ Motifs







Protein-Nucleic Acid Interactions







Regulatory Role







Strains/Constructs







Transcriptional Regulation
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