References Associated with Literature Topic: Other genomic analysis

Reference	Species	Genes Addressed
*Dunaiski CM, et al.* (2024)** Molecular epidemiology and antimicrobial resistance of vaginal Candida glabrata isolates in Namibia. Med Mycol CGD Papers Entry Pubmed Entry	C. glabrata	\|CDR1 \|ERG6 \|ERG7 \|FKS1 \|FKS2 \|FPS1 \|MSH2 \|PDR1 \|SNQ2
*Huang SJ, et al.* (2024)** Antifungal susceptibility, molecular epidemiology, and clinical risk factors of Candida glabrata in intensive care unit in a Chinese Tertiary Hospital. Front Cell Infect Microbiol 14:1455145 CGD Papers Entry Pubmed Entry	C. glabrata	\|FKS1 \|FKS2
*Kumar K, et al.* (2024)** SWI/SNF complex-mediated chromatin remodeling in Candida glabrata promotes immune evasion. iScience 27(4):109607 CGD Papers Entry Pubmed Entry Web Supplement Data	C. glabrata	\|BMT2 \|CHD1 \|EPA1 \|INO80 \|ISW1 \|ISW2 \|SNF2 \|STH1 \|SWR1
*Misas E, et al.* (2024)** Genomic description of acquired fluconazole- and echinocandin-resistance in patients with serial Candida glabrata isolates. J Clin Microbiol :e0114023 CGD Papers Entry Pubmed Entry	C. glabrata	\|FKS1 \|FKS2 \|PDR1
*Nickels TJ, et al.* (2024)** Tn-seq of the Candida glabrata reference strain CBS138 reveals epigenetic plasticity, structural variation, and intrinsic mechanisms of resistance to micafungin. G3 (Bethesda) CGD Papers Entry Pubmed Entry	C. glabrata	\|CDR1 \|FKS2 \|PDR1
*Rai LS, et al.* (2024)** Metabolic reprogramming during Candida albicans planktonic-biofilm transition is modulated by the transcription factors Zcf15 and Zcf26. PLoS Biol 22(6):e3002693 CGD Papers Entry Pubmed Entry Web Supplement Data	C. albicans	\|C4_02190C_A \|ECE1 \|HWP1 \|HYR1 \|INO1 \|ZCF15 \|ZCF26
Wang Y and Xu J (2024) Associations between Genomic Variants and Antifungal Susceptibilities in the Archived Global Candida auris Population. J Fungi (Basel) 10(1) CGD Papers Entry Pubmed Entry	C. auris	\|ERG11 \|FKS1
*Ben Abid F, et al.* (2023)** Molecular characterization of Candida auris outbreak isolates in Qatar from COVID-19 patients reveals the emergence of isolates resistant to three classes of antifungal drugs. Clin Microbiol Infect CGD Papers Entry Pubmed Entry	C. auris	\|CDR1 \|CDR2 \|CIS2 \|ERG11 \|ERG3 \|ERG4 \|ERG5 \|FKS1 \|SNQ2 \|STE6 \|TAC1b
*Li Y, et al.* (2023)** Whole genome analysis of echinocandin non-susceptible Candida Glabrata clinical isolates: a multi-center study in China. BMC Microbiol 23(1):341 CGD Papers Entry Pubmed Entry	C. glabrata	\|CAGL0E01353g \|CAGL0H07007g \|CAGL0K05313g \|CAGL0M02145g \|SUR2 \|ZCF15
*Patel SK, et al.* (2023)** Pol32, an accessory subunit of DNA polymerase delta, plays an essential role in genome stability and pathogenesis of Candida albicans. Gut Microbes 15(1):2163840 CGD Papers Entry Pubmed Entry	C. albicans	\|HSP30 \|HSP90 \|NRG1 \|POL32
*Spruijtenburg B, et al.* (2023)** Whole genome sequencing analysis demonstrates therapy-induced echinocandin resistance in Candida auris isolates. Mycoses CGD Papers Entry Pubmed Entry	C. auris	\|FKS1
*Wang F, et al.* (2023)** Codon usage bias analysis of mitochondrial protein-coding genes in 12 species of Candida. J Genet 102 CGD Papers Entry Pubmed Entry	C. parapsilosis	\|CapafMp10
*Zuber J, et al.* (2023)** Genome-Wide DNA Changes Acquired by Candida albicans Caspofungin-Adapted Mutants. Microorganisms 11(8) CGD Papers Entry Pubmed Entry	C. albicans	\|ALS5 \|C4_03210C_A \|C4_04960W_A \|C5_01660C_A \|C7_02580C_A \|C7_02710W_A \|C7_03580C_A \|CRZ1 \|CR_05110C_A \|CR_06360C_A \|GLC7 \|GSC1 \|GSL1 \|RSP5 \|MORE
*Conte M, et al.* (2022)** Effects of Hst3p inhibition in Candida albicans: a genome-wide H3K56 acetylation analysis. Front Cell Infect Microbiol 12:1031814 CGD Papers Entry Pubmed Entry Web Supplement Data	C. albicans	\|HST3
*Helmstetter N, et al.* (2022)** Population genetics and microevolution of clinical Candida glabrata reveals recombinant sequence types and hyper-variation within mitochondrial genomes, virulence genes and drug-targets. Genetics CGD Papers Entry Pubmed Entry	C. glabrata	\|CAGL0B00242g \|ERG4 \|FKS1 \|MATalpha1
*Pais P, et al.* (2022)** Multiple genome analysis of Candida glabrata clinical isolates renders new insights into genetic diversity and drug resistance determinants. Microb Cell 9(11):174-189 CGD Papers Entry Pubmed Entry Web Supplement Data	C. glabrata	\|CAGL0C04411g \|CAGL0H03465g \|CAGL0H09130g \|CAGL0I06270g \|CAGL0J00891g \|EPA1 \|ERG2 \|ERG20 \|ERG3 \|ERG9 \|FKS1 \|FKS2 \|PDR1 \|RAD6 \|MORE
*Rizzo M, et al.* (2022)** Stress combined with loss of the Candida albicans SUMO protease Ulp2 triggers selection of aneuploidy via a two-step process. PLoS Genet 18(12):e1010576 CGD Papers Entry Pubmed Entry	C. albicans	\|ULP1 \|ULP2 \|ULP3
*Spruijtenburg B, et al.* (2022)** Confirmation of fifth Candida auris clade by whole genome sequencing. Emerg Microbes Infect :1-15 CGD Papers Entry Pubmed Entry	C. auris	\|ERG11 \|TAC1b
*Guinea J, et al.* (2021)** Whole genome sequencing confirms Candida albicans and Candida parapsilosis microsatellite sporadic and persistent clones causing outbreaks of candidemia in neonates Med Mycol CGD Papers Entry Pubmed Entry
*Li D, et al.* (2021)** Application of Machine Learning Classifier to Candida auris Drug Resistance Analysis. Front Cell Infect Microbiol 11:742062 CGD Papers Entry Pubmed Entry	C. auris	\|ERG11
*Min K, et al.* (2021)** Integrative multi-omics profiling reveals cAMP-independent mechanisms regulating hyphal morphogenesis in Candida albicans PLoS Pathog 17:e1009861 CGD Papers Entry Pubmed Entry Web Supplement Data	C. albicans	\|BCY1 \|CYR1
*Mixao V, et al.* (2021)** Extreme diversification driven by parallel events of massive loss of heterozygosity in the hybrid lineage of Candida albicans Genetics 217:iyaa004 CGD Papers Entry Pubmed Entry
*Munoz JF, et al.* (2021)** Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris Genetics CGD Papers Entry Pubmed Entry	C. auris	\|B9J08_000020 \|B9J08_001049 \|B9J08_001512 \|B9J08_001533 \|B9J08_001960 \|B9J08_002580 \|B9J08_004095 \|B9J08_004119 \|B9J08_004456 \|B9J08_004881 \|B9J08_004907 \|B9J08_005531
C. albicans	\|ERG11
*Oh SH, et al.* (2021)** Using Genomics to Shape the Definition of the Agglutinin-Like Sequence ( ALS) Family in the Saccharomycetales Front Cell Infect Microbiol 11:794529 CGD Papers Entry Pubmed Entry	C. albicans	\|ALS1 \|ALS2 \|ALS3
*Vazquez-Franco N, et al.* (2021)** Candida glabrata Hst1-Rfm1-Sum1 complex evolved to control virulence-related genes Fungal Genet Biol CGD Papers Entry Pubmed Entry	C. glabrata	\|HST1 \|RFM1 \|SUM1
*Xu Z, et al.* (2021)** De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays Mol Microbiol 113:1209-1224 CGD Papers Entry Pubmed Entry Web Supplement Data	C. glabrata	\|AED1 \|AWP12 \|AWP13 \|CAGL0C00253g \|CAGL0C00968g \|CAGL0C01133g \|CAGL0C03828g \|CAGL0E00231g \|CAGL0E01661g \|CAGL0G06842g \|CAGL0I07293g \|CAGL0J01727g \|CAGL0J01774g \|CAGL0J03780g \|MORE
*Yang F, et al.* (2021)** The fitness costs and benefits of trisomy of each Candida albicans chromosome Genetics CGD Papers Entry Pubmed Entry
*Jenull S, et al.* (2020)** ATAC-Seq Identifies Chromatin Landscapes Linked to the Regulation of Oxidative Stress in the Human Fungal Pathogen Candida albicans J Fungi (Basel) 6:E182 CGD Papers Entry Pubmed Entry Web Supplement Data	C. albicans	\|CAP1
*Sitterle E, et al.* (2020)** Large-scale genome mining allows identification of neutral polymorphisms and novel resistance mutations in genes involved in Candida albicans resistance to azoles and echinocandins. J Antimicrob Chemother CGD Papers Entry Pubmed Entry	C. albicans	\|ERG11 \|GSC1 \|GSL1 \|MRR1 \|TAC1 \|UPC2
*Viana R, et al.* (2020)** Genome-Scale Metabolic Model of the Human Pathogen Candida albicans: A Promising Platform for Drug Target Prediction J Fungi (Basel) 6:E171 CGD Papers Entry Pubmed Entry	C. albicans	\|DFR1 \|ERG11 \|ERG7 \|FAS1 \|FAS2 \|FOL1 \|GSC1 \|GSL1 \|TRR1 \|URA1

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