C. albicans C3_02260C Feature History

Nomenclature History

Alias Name(s)	Reference
IPF25612.1	CandidaDB CGD Papers Entry
IPF4233.2	CandidaDB CGD Papers Entry
Contig4-2798_0016	Berman J (2005) Mapping of ORFs in Assembly 4 to those in Assembly 19. CGD Papers Entry
orf6.6453	CGD (2005) CGD comparison of orf6 and orf19 predicted protein products. CGD Papers Entry
CA4014	CandidaDB CGD Papers Entry
CTK1	*Maglott D, et al.* (2007)** Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 35(Database issue):D26-31 CGD Papers Entry Pubmed Entry Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT
CaO19.1619	*Maglott D, et al.* (2007)** Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 35(Database issue):D26-31 CGD Papers Entry Pubmed Entry Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT
CaO19.9187	*Maglott D, et al.* (2007)** Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 35(Database issue):D26-31 CGD Papers Entry Pubmed Entry Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT

Sequence Annotation Notes

Date	Note
2014年06月24日	Initial load of C. albicans SC5314 Assembly 22 features
2016年06月22日	The genomic coordinates of this feature changed as a result of corrections to the haplotype assignments on chromosome 3 of C. albicans SC5314. Haplotype data (Legrand et al, 2008; Berman and Forche, 2016) were compared with sequence data (Muzzey et al, 2013) for both the wild-type diploid strain and the strain RBY10-10, which is homozygous for chromosome 3A. Approximately 845 kbp were exchanged between chromosome 3A and chromosome 3B of Assembly 22.
2016年06月22日	Corrections to the haplotype assignments on chromosome 3 of C. albicans SC5314, based on comparisons of haplotype data (Legrand et al, 2008; Berman and Forche, 2016) with sequence data (Muzzey et al, 2013) for both the wild-type diploid strain and the strain RBY10-10, which is homozygous for chromosome 3A. Approximately 845 kbp were exchanged between chromosome 3A and chromosome 3B of Assembly 22, including the entire left arm of the chromosome, and a portion of the right arm extending from CEN3 to within the coding sequence of the gene C3_04040W (orf19.2804). This results in sequence and gene model changes for most chromosome 3 features. *Legrand M, et al.* (2008)** Haplotype mapping of a diploid non-meiotic organism using existing and induced aneuploidies. PLoS Genet 4(1):e1 CGD Papers Entry Pubmed Entry Reference LINKOUT Reference LINKOUT Reference LINKOUT *Muzzey D, et al.* (2013)** Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure. Genome Biol 14(9):R97 CGD Papers Entry Pubmed Entry Reference LINKOUT Berman J and Forche A (2016) Correction of the haplotype assignments for chromosome 3 of Assembly 22 in C. albicans SC5314 CGD Papers Entry

Curation Notes

Date	Note
2014年06月25日	There are no sequence changes in this ORF between Assembly 19 and Assembly 20.
2014年06月25日	There are no sequence changes in this ORF between Assembly 20 and Assembly 21.
2014年06月25日	Notes from the /product and/or /remarks fields of the EMBL-format files provided by the Annotation Working Group/Assembly 20 collaboration: /product: "kinase of RNA polymerase II carboxy-terminal domain (CTD), alpha subunit"
2014年06月25日	There were no changes to the nucleotide sequence of this ORF between Assembly 19 and Assembly 20; please see the CGD Sequence Documentation for more details.
2014年06月25日	The Assembly 21 location of this ORF was determined by comparing the sequence of the ORF in Assembly 20 to the Assembly 21 chromosome.

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