C. albicans SSY1/C2_04060C Locus History

Nomenclature History

Standard Name	Reference
SSY1	*Nobile CJ, et al.* (2003)** Genetic control of chlamydospore formation in Candida albicans. Microbiology 149(Pt 12):3629-37 CGD Papers Entry Pubmed Entry Reference LINKOUT

Alias Name(s)	Reference
CSY1	*Brega E, et al.* (2004)** Candida albicans Csy1p is a nutrient sensor important for activation of amino acid uptake and hyphal morphogenesis. Eukaryot Cell 3(1):135-43 CGD Papers Entry Pubmed Entry Reference LINKOUT
IPF5802.2	CandidaDB CGD Papers Entry
IPF29641.1	CandidaDB CGD Papers Entry
IPF29694.1	CandidaDB CGD Papers Entry
Contig4-2714_0007	Berman J (2005) Mapping of ORFs in Assembly 4 to those in Assembly 19. CGD Papers Entry
orf6.6705	CGD (2005) CGD comparison of orf6 and orf19 predicted protein products. CGD Papers Entry
SSY1.5	*Braun BR, et al.* (2005)** A human-curated annotation of the Candida albicans genome. PLoS Genet 1(1):36-57 CGD Papers Entry Pubmed Entry
CA4215	CandidaDB CGD Papers Entry
CaO19.814	*Maglott D, et al.* (2007)** Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 35(Database issue):D26-31 CGD Papers Entry Pubmed Entry Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT

Sequence Annotation Notes

Date	Note
2014年06月24日	Initial load of C. albicans SC5314 Assembly 22 features
2014年06月25日	Based on comparative genome analysis and new sequence data, the sequence of this ORF has been changed. View sequence update information/alignment. "Old" sequence and positional coordinates refer to the version of Assembly 21 in CGD prior to Nov 7, 2008 (available in the archive directory with date of '20081107' specified in the file names), and "New" refers to the updated Assembly 21 sequence in CGD on Nov 7, 2008. Old: 855028 ATAGAAAAA-GAATAAACAATGTTCCTATACATCCAACAATAGCTGAATATGGTTGGA 855084 \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| New: ATAGAAAAAAGAATAAACAATGTTCCTATACATCCAACAATAGCTGAATATGGTTGGA *Butler G, et al.* (2009)** Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 459(7247):657-62 CGD Papers Entry Pubmed Entry Reference LINKOUT

Date

Note

2014年06月24日

Initial load of C. albicans SC5314 Assembly 22 features

2014年06月25日

Based on comparative genome analysis and new sequence data, the sequence of this ORF has been changed.

View sequence update information/alignment.

"Old" sequence and positional coordinates refer to the version of Assembly 21 in CGD prior to Nov 7, 2008 (available in the archive directory with date of '20081107' specified in the file names), and "New" refers to the updated Assembly 21 sequence in CGD on Nov 7, 2008.

Old: 855028 ATAGAAAAA-GAATAAACAATGTTCCTATACATCCAACAATAGCTGAATATGGTTGGA 855084
 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
New: ATAGAAAAAAGAATAAACAATGTTCCTATACATCCAACAATAGCTGAATATGGTTGGA

Butler G, et al. (2009) Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 459(7247):657-62
CGD Papers Entry Pubmed Entry Reference LINKOUT

Curation Notes

Date	Note
2014年06月25日	This ORF was merged with deleted orf19.814.3 during preparation of Assembly 20.
2014年06月25日	Complex Sequence Changes in Assembly 20: this ORF has changed significantly in sequence between Assembly 19 and Assembly 20. Please see the CGD Sequence Documentation for more details.
2014年06月25日	The Assembly 21 coordinates of this ORF reflect non-intron "adjustment(s)" made to compensate for presumed sequencing errors.
2014年06月25日	There are complex sequence changes in this ORF between Assembly 19 and Assembly 20; the predicted amino acid identity is less than 98% and/or the aligned region does not encompass the entire length of the ORF.
2014年06月25日	There are no sequence changes in this ORF between Assembly 20 and Assembly 21.
2014年06月25日	In the Assembly 20 files released by the Annotation Working Group/Assembly 20 collaboration, this ORF comprises segments separated by a gap/intron/adjustment that has a length which is a negative number; that is, the coding sequence contains two overlapping segments, such that some sequence is counted twice. Like the introns/gaps that are small in size, these "adjustments" should also be considered flags that indicate that resequencing of the area is advised.
2014年06月25日	The coordinates of this ORF reflect non-intron "adjustment(s)" made to compensate for presumed sequencing errors (Assembly20). Please see the CGD Sequence Documentation for more information.
2014年06月25日	Notes from the /product and/or /remarks fields of the EMBL-format files provided by the Annotation Working Group/Assembly 20 collaboration: /product: transcriptional regulator of multiple amino acid permeases ; /remarks: gene family \| sequencing error?
2014年06月25日	The Assembly 21 location of this ORF was determined by comparing the sequence of the ORF in Assembly 20 to the Assembly 21 chromosome.

Return to CGD

CGD Copyright © 2004-2025 The Board of Trustees, Leland Stanford Junior University.
Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.
To cite CGD, please use the following reference: Skrzypek MS, Binkley J, Binkley G, Miyasato SR, Simison M, Sherlock G (2017). The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data. Nucleic Acids Res 45 (D1); D592-D596; see How to cite CGD.