General information of database
info Alternative name Structure Atlas of Human Genome
info Creator
Creator Name:
Chie Motono*
Link to J-GLOBAL
Link to researchmap
Creator Affiliation:
The Molecular Profiling Research Center for Drug Discovery (molprof), The National Institute of Advanced Industrial Science and Technology (AIST)
Creator Name:
Motonori Ota
Link to J-GLOBAL
Link to researchmap
Creator Affiliation:
Graduate School of Information Sciences, Nagoya University
info Contact address Chie Motono
Tel : +81-3-3599-8067
E-mail : sahg address
info Database classification Structure Databases - Protein structure
Human and other Vertebrate Genomes - Human ORFs
Protein sequence databases - Protein properties
info Organism
Taxonomy Name:
Homo sapiens
info Database description All of the Open Reading Frames in the human genome are subjected to a fully automated, exhaustive protein-structure-prediction pipeline to generate protein structure models. SAHG contains 42,577 domain-structure models in ~24900 unique human protein sequences from the RefSeq database.
info Features and manner of utilization of database SAHG is distinct in that the prediction pipeline is focus on proteins of higher organisms, and in that conformational changes of proteins were predicted and displayed as animated image.
info Background and funding -
info Background and funding
Name:
JST, BIRD (Institute for Bioinformatics Research and Development)
Link to J-GLOBAL
Link to Life science projects in Japan
info Reference(s)
Article title:
SAHG, a comprehensive database of predicted structures of all human proteins
Author name(s):
Chie Motono, Junichi Nakata, Ryotaro Koike, Kana Shimizu, Matsuyuki Shirota, Takayuki Amemiya, Kentaro Tomii, Nozomi Nagano, Naofumi Sakaya, Kiyotaka Misoo, Miwa Sato, Akinori Kidera, Hidekazu Hiroaki, Tsuyoshi Shirai, Kengo Kinoshita, Tamotsu Noguchi, Motonori Ota
Journal:
Nucleic Acids Research, 2011, Vol. 39,
External Links:
Link to PubMed
Link to J-GLOBAL
Original website information
info URL of the original website (Closed) http://bird.cbrc.jp/sahg
info Operation start date 2009/10
info Last update date 2010年6月25日
info URL of the portal site -
info Whole data download -
info Referenced database RefSeq, HPRD, EzCatDB, InterPro, UniProtKB/Swiss-Prot
info Entry list Available
info Query search Available
info Web services Available
info URL of Web services -
info Need for user registration Not available