Life Science Database Archive
PoSSuM

(Drug Search)Known binding site similarity

Data detail

info Data name (Drug Search)Known binding site similarity
info DOI
info Description of data contents

Similarity data between known/potential binding sites in (Drug Search) query and target sites

info Data file
File name:
possum_binding_sites_putative_similarity.zip
File size:
5 MB
info Simple search URL
info Data acquisition method

PDB

info Data analysis method -
info Number of data entries

113,495 entries

Data itemDescription
Q:PocketIndex Internal ID for query site
T:PocketIndex Internal ID for target site
Q:PDB_ID PDB ID for query site
T:PDB_ID PDB ID for target site
Q:HET_Code HED code for query site
T:HET_Code HED code for target site
Q:ChainID ID for the chain where the query site is
T:ChainID ID for the chain where the target site is
Q:Res.No. Residence number for the amino acid where the query site is
T:Res.No. Residence number for the amino acid where the target site is
AlignedLength Length of amino acid alignment
RMSD Root Mean Square Deviation
AminoIdentity Amino acid match rate
Q:MolName Molecular name of the query site
T:MolName Molecular name of the target site
Q:EC EC ID for the query site
T:EC EC ID for the target site
Q:CATH CATH ID for the query site
T:CATH CATH ID for the target site
Q:SCOPe SCOPe ID for the query site
T:SCOPe SCOPe ID for the target site
Q:UniProt UniProt ID for the query site
T:UniProt UniProt ID for the target site
Q:UniRef50 UniRef50 cluster ID for the query site (when it is analysed)
T:UniRef50 UniRef50 cluster ID for the target site (when it is analysed)
EC_Df Different or not between query and target site in EC ID
CATH_Df Different or not between query and target site in CATH ID
SCOPe_Df Different or not between query and target site in SCOPe ID
ChEMBL_Assay Assay data in ChEMBL or none
AlignedResidues Amino acid alignment result

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