Data detail | |||||||||||||||||
| info Data name | LD bin list (Phase II) | ||||||||||||||||
| info DOI | 10.18908/lsdba.nbdc00036-003 | ||||||||||||||||
| info Description of data contents | LD bin list of D2 (Phase II). LD bin is a group of SNPs that mutually shows high LD (r2 > 0.8). See below for detail. | ||||||||||||||||
| info Data file | File name: dhaplo_d2_ld_bin_list.zip File size: 3.0MB | ||||||||||||||||
| info Simple search URL | http://togodb.biosciencedbc.jp/togodb/view/dhaplo_d2_ld_bin_list#en | ||||||||||||||||
| info Data acquisition method | Perlegen 281K arrays、Affymetrix 500K arrays | ||||||||||||||||
| info Data analysis method | Common SNPs (MAF > 5%) were selected, and LDs (r2 values) between every SNP pairs within 300 kb were calculated. LD bins were collected so that every pairs within the bin shows r2 >0.8, by the greedy method of ldSELECT (Carson et al., AJHG 74, 106-120, 2004) after the program was modified so that it can handle haploid data. | ||||||||||||||||
| info Number of data entries | 254,762 entries | ||||||||||||||||
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