Life Science Database Archive
TMFunction

TMFunction data

Data detail

info Data name TMFunction data
info DOI
info Description of data contents

TMFunction is a database of functional residues in alpha-helical and beta-barrel membrane proteins. Each protein is identified with its name and source alongwith the UniProt code. The protein data bank (PDB) codes are also given for available proteins. Different methods and experimental parameters, for example, affinity, dissociation constant, IC50, activity etc. are given in the database. Further, we have provided the numerical experimental value for each residue (or mutant) in a protein. The experimental data are collected from the literature both by searching the journals as well as with the keyword search at PubMed. In addition, complete reference is given with journal citation and PMID number.

info Data file
File name:
tmfunction.zip
File size:
48.5 KB
info Simple search URL
info Data acquisition method

UniProt, PDB, PubMed

info Data analysis method -
info Number of data entries

2,907 entries

Data itemDescription
Entry Entry
Residue(mutation) Name of residue with mutation
Residue Name of residue
Functionally important Functionally important or not
Function of the protein Function of the protein
Location Location of residue in the protein
Protein Name(abbreviation) Protein Name(abbreviation)
Source(scientific name) Source of protein (scientific name)
Source(english name) Source(english name)
Authors Authors of reference
Journal Reference Journal Reference
PMID PubMed ID of reference
Experiments Experiments
Experimental data The value with "Parameter" shows a measurement value in experiments.
Parameter Experimental parameter
Methods/conditions Experimental methods/conditions
PDB ID PDB ID of the protein structure
ASA Accessible surface area
Sec. Str Secondary structure of this protein
  • G: 3-10 helix
  • H: Helix
  • L: Loop
Uniprot ID UniProt ID of protein
Type Type of protein
Remarks Remarks
Keywords Keywords

AltStyle によって変換されたページ (->オリジナル) /