Selection, Reverse-Engineering and Prediction in Cascade Networks [R package Cascade version 2.3]

Cascade: Selection, Reverse-Engineering and Prediction in Cascade Networks

A modeling tool allowing gene selection, reverse engineering, and prediction in cascade networks. Jung, N., Bertrand, F., Bahram, S., Vallat, L., and Maumy-Bertrand, M. (2014) <doi:10.1093/bioinformatics/btt705>.

Version: 2.3

Depends: R (≥ 3.5.0)

Imports: abind, animation, cluster, grid, igraph, lars, lattice, limma, magic, methods, nnls, splines, stats4, survival, tnet, VGAM

Suggests: R.rsp, CascadeData, knitr, testthat (≥ 3.0.0)

Published: 2025年09月19日

DOI: 10.32614/CRAN.package.Cascade

Author: Frederic Bertrand ORCID iD [cre, aut], Myriam Maumy-Bertrand ORCID iD [aut], Laurent Vallat [ctb], Nicolas Jung [ctb]

Maintainer: Frederic Bertrand <frederic.bertrand at lecnam.net>

BugReports: https://github.com/fbertran/Cascade/issues/

License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]

URL: https://fbertran.github.io/Cascade/, https://github.com/fbertran/Cascade/

NeedsCompilation: no

Classification/MSC: 62J05, 62J07, 62J99, 92C42

Citation: Cascade citation info

Materials: README, NEWS

In views: NetworkAnalysis, Omics

CRAN checks: Cascade results

Documentation:

Reference manual: Cascade.html , Cascade.pdf

Vignettes: Cascade: Manual (source)
Cascade: Introduction to Cascade (source)
Cascade: E-MTAB-1475_re-analysis (source)

Downloads:

Package source: Cascade_2.3.tar.gz

Windows binaries: r-devel: Cascade_2.3.zip, r-release: Cascade_2.3.zip, r-oldrel: Cascade_2.3.zip

macOS binaries: r-release (arm64): Cascade_2.3.tgz, r-oldrel (arm64): Cascade_2.3.tgz, r-release (x86_64): Cascade_2.3.tgz, r-oldrel (x86_64): Cascade_2.3.tgz

Old sources: Cascade archive

Reverse dependencies:

Reverse imports: SelectBoost

Linking:

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