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TxDb.Hsapiens.UCSC.hg19.knownGene

TxDb.Hsapiens.UCSC.hg19.knownGene

This is the released version of TxDb.Hsapiens.UCSC.hg19.knownGene; for the devel version, see TxDb.Hsapiens.UCSC.hg19.knownGene.

Annotation package for TxDb object(s)

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DOI: 10.18129/B9.bioc.TxDb.Hsapiens.UCSC.hg19.knownGene

Bioconductor version: Release (3.22)

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Bioconductor Core Team, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TxDb.Hsapiens.UCSC.hg19.knownGene")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData, Genetics, Homo_sapiens, TxDb

Version 3.22.1

License Artistic-2.0

Depends GenomicFeatures

Imports AnnotationDbi

System Requirements

URL

See More

Suggests

Linking To

Enhances

Depends On Me FDb.InfiniumMethylation.hg19, Homo.sapiens, annotation, variants

Imports Me appreci8R, ChIPseeker, crupR, decompTumor2Sig, epimutacions, HiLDA, musicatk, nearBynding, OutSplice, RareVariantVis, RgnTX, rGREAT, signifinder, uncoverappLib, cinaR, driveR

Suggests Me AllelicImbalance, AnnotationDbi, annotatr, ATACseqQC, Bioc.gff, BiocParallel, biomvRCNS, biovizBase, borealis, bumphunter, ChIPpeakAnno, chromPlot, CNVRanger, cpvSNP, CRISPRseek, derfinder, derfinderPlot, dmrseq, EpiCompare, EpiMix, esATAC, FRASER, GA4GHclient, GA4GHshiny, gage, geneAttribution, GENESIS, GenomicAlignments, GenomicFeatures, GenomicInteractionNodes, geomeTriD, ggbio, gmapR, GRaNIE, groHMM, GUIDEseq, gwascat, HelloRanges, karyoploteR, linkSet, MAST, MesKit, MutationalPatterns, NanoMethViz, OUTRIDER, pageRank, plotgardener, ProteoDisco, PureCN, R3CPET, ramr, regionReport, RiboProfiling, rtracklayer, SGSeq, SOMNiBUS, StructuralVariantAnnotation, SummarizedExperiment, svaNUMT, svaRetro, TCGAutils, TFEA.ChIP, tidyCoverage, trackViewer, transcriptR, tximport, UMI4Cats, VariantAnnotation, VariantFiltering, VariantTools, chipenrich.data, SNPassoc

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TxDb.Hsapiens.UCSC.hg19.knownGene_3.22.1.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Package Short Url https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/

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