annotation

This is the released version of annotation; for the devel version, see annotation.

Genomic Annotation Resources

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DOI: 10.18129/B9.bioc.annotation

Bioconductor version: Release (3.22)

Annotation resources make up a significant proportion of the Bioconductor project. And there are also a diverse set of online resources available which are accessed using specific packages. This walkthrough will describe the most popular of these resources and give some high level examples on how to use them.

Author: Marc RJ Carlson [aut], Herve Pages [aut], Sonali Arora [aut], Valerie Obenchain [aut], Martin Morgan [aut], Lori Shepherd [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("annotation")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("annotation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("annotation")

Annotating Genomic Ranges HTML R Script

Genomic Annotation Resources HTML R Script

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationWorkflow, Workflow

Version 1.34.0

License Artistic-2.0

Depends R (>= 3.3.0), GenomeInfoDb, VariantAnnotation, AnnotationHub, Organism.dplyr, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm10.ensGene, org.Hs.eg.db, org.Mm.eg.db, Homo.sapiens, BSgenome.Hsapiens.UCSC.hg19, biomaRt, BSgenome, TxDb.Athaliana.BioMart.plantsmart22

Imports

System Requirements

URL http://bioconductor.org/packages/annotation

Suggests knitr, rmarkdown, BiocStyle

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package annotation_1.34.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/annotation

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/annotation

Package Short Url https://bioconductor.org/packages/annotation/

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