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CAMERA (development version)

CAMERA

This is the development version of CAMERA; for the stable release version, see CAMERA.

Collection of annotation related methods for mass spectrometry data

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DOI: 10.18129/B9.bioc.CAMERA

Bioconductor version: Development (3.23)

Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments

Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R, enter citation("CAMERA")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CAMERA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAMERA")

Atom count expectations with compoundQuantiles PDF

Isotope pattern validation with CAMERA PDF

Molecule Identification with CAMERA PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software

Version 1.67.0

In Bioconductor since BioC 2.4 (R-2.9) (16.5 years)

License GPL (>= 2)

Depends R (>= 3.5.0), methods, Biobase, xcms(>= 1.13.5)

Imports methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph

System Requirements

URL http://msbi.ipb-halle.de/msbi/CAMERA/

Bug Reports https://github.com/sneumann/CAMERA/issues/new

See More

Suggests faahKO, RUnit, BiocGenerics, multtest

Linking To

Enhances Rmpi, snow

Depends On Me flagme, IPO, LOBSTAHS, MAIT, metaMS, PtH2O2lipids

Imports Me

Suggests Me cliqueMS, msPurity, RMassBank, mtbls2

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CAMERA_1.67.0.tar.gz

Windows Binary (x86_64) CAMERA_1.67.0.zip (64-bit only)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/CAMERA

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CAMERA

Bioc Package Browser https://code.bioconductor.org/browse/CAMERA/

Package Short Url https://bioconductor.org/packages/CAMERA/

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