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SAM tools

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SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format.

The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools

Project Activity

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Categories

Bio-Informatics

License

BSD License, MIT License

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SAM tools Web Site

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4.7 out of 5 stars
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User Reviews

  • kurioz Posted 2014年01月30日
    A core component of many a bioinformatics pipeline
  • bakerwm Posted 2013年12月18日
    Error: $./samtools: /lib64/libz.so.1: version `ZLIB_1.2.3.3' not found (required by ./samtools) How can I fix this problem? THX
  • diekhans Edited 2013年11月06日
    Brilliant idea, code is not robust. Doesn't check return status of malloc, other libraries. One shouldn't have to use gdb to understand an expected error.
    1 user found this review helpful.
  • saramills Posted 2013年06月26日
    Nice, thank you
    1 user found this review helpful.
  • hibiz Posted 2013年04月07日
    Wonderful project! Thanks for amazing work!
    2 users found this review helpful.
Read more reviews>

Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Developers, Science/Research

User Interface

Command-line, Curses/Ncurses

Programming Language

C, Perl

Related Categories

Perl Bio-Informatics Software, C Bio-Informatics Software

Registered

2008年11月25日
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