zPicture :: dynamic blastz alignment visualization

Dcode.org
ECR Browser
ECRBase
Mulan
zPicture
DiRE
SynoR
rVista 2.0
multiTF
Array2BIO
eShadow
Instructions Example: human-rat-fugu and human-rat GATA3 alignment Description

zPicture is a dynamic alignment and visualization tool that is based on blastz alignment program utilized by PipMaker . zPicture alignments can be automatically submitted to rVista 2.0 to identify conserved transcription factor binding sites.


multi-zPicture: multiple sequence alignment tool
SEQUENCE 1
Upload sequence and gene annotation from
UCSC Genome Browser
- or -
Paste sequence
(in FASTA format )
- or -
FASTA file (.fa)
- or -
NCBI accession #
SEQUENCE 2
Upload sequence and gene annotation from
UCSC Genome Browser
- or -
Paste sequence
(in FASTA format )
- or -
FASTA file (.fa)
- or -
NCBI accession #
OPTIONAL :: ANNOTATION 1
Repeats:
Repeats are identified by lower-case letters
Mask repetitive elements
Gene annotation (if any):
Paste
File
OPTIONAL :: ANNOTATION 2
Repeats:
Repeats are identified by lower-case letters
Mask repetitive elements
Gene annotation (if any):
Paste
File
Select to run "fast" BlastZ on microbial-size genomes
Select to perform "chained" (global) blastz alignment


Return to previously submitted request


Obtain a copy of zPicture software

NCBI DCODE.org Comparative Genomics Developments

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