SNPs in microRNA target sites and their potential role in human disease
- PMID: 28381629
- PMCID: PMC5413909
- DOI: 10.1098/rsob.170019
SNPs in microRNA target sites and their potential role in human disease
Abstract
In the post-genomic era, the goal of personalized medicine is to determine the correlation between genotype and phenotype. Developing high-throughput genotyping technologies such as genome-wide association studies (GWAS) and the 1000 Genomes Project (http://www.internationalgenome.org/about/#1000G_PROJECT) has dramatically enhanced our ability to map where changes in the genome occur on a population level by identifying millions of single nucleotide polymorphisms (SNPs). Polymorphisms, particularly those within the coding regions of proteins and at splice junctions, have received the most attention, but it is also now clear that polymorphisms in the non-coding regions are important. In these non-coding regions, the enhancer and promoter regions have received the most attention, whereas the 3'-UTR regions have until recently been overlooked. In this review, we examine how SNPs affect microRNA-binding sites in these regions, and how mRNA stability changes can lead to disease pathogenesis.
Keywords: microRNA; poly-miRTS; single nucleotide polymorphisms.
© 2017 The Authors.
Conflict of interest statement
The authors declare no competing financial interests.
Figures
References
-
- Roses AD. 2000. Pharmacogenetics and the practice of medicine. Nature 405, 857–865. (doi:10.1038/35015728) - DOI - PubMed
-
- Levy S, et al. 2007. The diploid genome sequence of an individual human. PLoS Biol. 5, e254 (doi:10.1371/journal.pbio.0050254) - DOI - PMC - PubMed
-
- Wu J, Jiang R. 2013. Prediction of deleterious nonsynonymous single-nucleotide polymorphism for human diseases. Sci. World J. 2013, 675851 (doi:10.1155/2013/675851) - DOI - PMC - PubMed
-
- Savas S, Tuzmen S, Ozcelik H. 2006. Human SNPs resulting in premature stop codons and protein truncation. Hum. Genom. 2, 274–286. (doi:10.1186/1479-7364年2月5日-274) - DOI - PMC - PubMed
-
- Shastry BS. 2007. SNPs in disease gene mapping, medicinal drug development and evolution. J. Hum. Genet. 52, 871–880. (doi:10.1007/s10038-007-0200-z) - DOI - PubMed
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources