Program

Day 1 at a glance(presenter only) | details | Day 2 at a glance(presenter only) | details |

Day 3 at a glance(presenter only) | details | | Download whole program (PDF – updated on December 2nd) icon_pdf

P: Proceedings Track HL: Highlight Track T: Technology Track S: Special Track

Last update : Dec. 2, 2014

Day 1 – Monday, December 15 – at a glance (presenter only)

8:15 – 19:00 Registration desk open
3F Auditorium 3F Media hall 4F Meeting room1
8:45 – 9:00 Opening remarks
9:00 – 10:00 Keynote speech 1
Masami Yokota HIRAI Understanding of plant metabolism via metabolomics-based mathematical modeling
10:15 – 11:15 Session 1.1A Session 1.1B Session 1.1C
10:15 – 10:45 P31 Kansuporn Sriyudthsak P87 Broto Chakrabarty P92 Tien-Hao Chang
10:45 – 11:15 P06 Kazuhiro Maeda P19 Paul Yoo P15 Wei-Sheng Wu
11:15 – 13:00 Lunch at various restaurants in walk distance of venue.
AASBi Board Meeting at the meeting room 4 on the 4th floor.
13:00 – 14:00 Keynote speech 2
Thomas LENGAUER Custom-tailoring combination drug therapies with bioinformatics
14:15 – 16:15 Session 1.2A Session 1.2B Session 1.2C
14:15 – 14:45 P05 Junhee Seok P90 Yi-Yu Hsu P69 Ryota Mori
14:45 – 15:15 P30 Naoki Nariai P88 Jiajie Peng P12 Alberto Pascual-Montano
15:15 – 15:45 HL116 Hideya Kawaji P22 Masaaki Kotera T6 SGI – James Reaney
15:45 – 16:15 TBA P81 Jiun-Huang Ju
16:15 – 16:40 Coffee Break
16:40 – 17:40 Poster session 1
17:40 – 18:40 ISCB open business meeting
19:00 Venue closed

Day 2 – Tuesday, December 16 – at a glance (presenter only)

8:10 – 18:00 Registration desk open
3F Auditorium 3F Media hall 4F Meeting room1
8:30 – 9:30 Keynote speech 3
Limsoon WONG Delivering a quantum leap in the reproducibility, precision, and sensitivity of gene-expression-profile analysis even when sample size is extremely small.
9:45 – 11:15 Session 2.1A Session 2.1B Session 2.1C
9:45 – 10:15 P82 Chih-Yuan Hsu P76 Dan He S1 Asif M. Khan
10:15 – 10:45 HL108 Eudes Barbosa P09 Wenbao Yu S2 Christian Schönbach
10:45 – 11:15 P94 Michal Wozniak P86 Alexandros Manolakos T5 SciEngines
11:15 – 13:00 Lunch at various restaurants in walk distance of venue
13:00 – 14:00 Keynote speech 4
Janet KELSO What we have learned from sequencing archaic human genomes
14:15 – 16:15 Session 2.2A Session 2.2B Session 2.2C
14:15 – 14:45 HL106 Rajeev Azad P56 Yutaka Ueno P51 Bingqing Lin, et al.
14:45 – 15:15 P18 Chien-Ming Chen P67 So Kobiki P39 Hiroyuki Kuwahara
15:15 – 15:45 P66 Junho Kim P29 Chern Han Yong P71 Bartek Wilczynski
15:45 – 16:15 P21 Xinghua Lu T3 Level Five – Nozomi Nagano
16:15 – 16:40 Coffee break
16:40 – 17:40 Poster session 2
18:00 Venue closed
18:30 – 20:00 Conference dinner at GRAND PACIFIC LE DAIBA

Day 3 – Wednesday, December 17 – at a glance (presenter only)

8:15 – 18:00 Registration desk open
3F Auditorium 3F Media hall 4F Meeting room1
9:00 – 10:00 Keynote speech 5
Shinya KURODA Temporal coding of insulin action
10:15 – 12:15 Session 3.1A Session 3.1B
10:15 – 10:45 P58 Che Lin HL111 Yosvany López
10:45 – 11:15 P23 Alexis Vandenbon P70 Junfang Chen
11:15 – 11:45 HL109 Yoshihiko Hasegawa HL115 Yutaka Saito
11:45 – 12:15 HL105 Ashwini Patil T4 Life Technologies Japan Ltd.
12:15 – 13:30 Lunch at venue
13:30 – 15:30 Session 3.2A Session 3.2B
13:30 – 14:00 T7 SGI – James Reaney P55 Kunihiko Sadakane
14:00 – 14:30 HL107 Yana Bromberg, et al. P77 Kyu-Baek Hwang
14:30 – 15:00 TBA P91 Christina Boucher
15:00 – 15:30 T2 AIST – Jun Sese P34 Idoia Ochoa
15:30 – 16:00 Coffee Break
16:00 – 17:00 Keynote speech 6
Alfonso VALENCIA Cancer Genomics and Computational Biology
17:00 – 17:30 Award ceremony and closing remarks
18:00 Venue closed

P: Proceedings Track HL: Highlight Track T: Technology Track S: Special Track

Last update : Dec. 2, 2014

DAY 1

Keynote speech 1 | 9:00 – 10:00, Day 1, 3F Auditorium
Masami Yokota HIRAI Understanding of plant metabolism via metabolomics-based mathematical modeling

Session 1.1A | 10:15 – 11:15, Day 1, 3F Auditorium
P31 U–system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network. Kansuporn Sriyudthsak, Yuji Sawada, Yukako Chiba, Yui Yamashita, Shigehiko Kanaya, Hitoshi Onouchi, Toru Fujiwara, Satoshi Naito, Ebernard O. Voit, Fumihide Shiraishi and Masami Yokota Hirai. ◆だいやまーくAbstract
P06 Analytical study of robustness of a negative feedback oscillator by multiparameter sensitivity. Kazuhiro Maeda and Hiroyuki Kurata. ◆だいやまーくAbstract

Session 1.1B | 10:15 – 11:15, Day 1, 3F Media hall
P87 PRIGSA: Protein Repeat Identification by Graph Spectral Analysis. Broto Chakrabarty and Nita Parekh. ◆だいやまーくAbstract
P19 Randomized Subspace Learning for Proline Cis-Trans Isomerization Prediction. Kamal Taha, Paul Yoo and Sami Muhaidat. ◆だいやまーくAbstract

Session 1.1C | 10:15 – 11:15, Day 1, 4F Meeting room1
P92 A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae. Wei-Sheng Wu, Ming-Liang Wei, Chia-Ming Yeh and Tien-Hao Chang. ◆だいやまーくAbstract
P15 Identifying cooperative transcription factors in yeast using multiple data sources. Wei-Sheng Wu, Mei-Huei Jhu and Fu-Jou Lai. ◆だいやまーくAbstract

Keynote speech 2 | 13:00 – 14:00, Day 1, 3F Auditorium
Thomas LENGAUER Custom-tailoring combination drug therapies with bioinformatics

Session 1.2A | 14:15 – 16:15, Day 1, 3F Auditorium
P05 RASA: Robust Alternative Splicing Analysis for Human Transcriptome Arrays. Junhee Seok, Weihong Xu, Ronald Davis and Wenzhong Xiao. ◆だいやまーくAbstract
P30 TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads. Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata and Masao Nagasaki. ◆だいやまーくAbstract
HL116 Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing. Hideya Kawaji, Marina Lizio, Masayoshi Itoh, Mutsumi Kanamori-Katayama, Ai Kaiho, Hiromi Nishiyori-Sueki, Jay W. Shin, Miki Kojima-Ishiyama, Mitsuoki Kawano, Mitsuyoshi Murata, Noriko Ninomiya-Fukuda, Sachi Ishikawa-Kato, Sayaka Nagao-Sato, Shohei Noma, Yoshihide Hayashizaki, Alistair R.R. Forrest and Piero Carninci. ◆だいやまーくAbstract
T1(cancelled) How to sequence a small country. Sidra Medical and Research Centre – Andrey Ptitsyn. ◆だいやまーくAbstract

Session 1.2B | 14:15 – 16:15, Day 1, 3F Media hall
P90 Curatable Named-entity Recognition using Semantic Relations. Yi-Yu Hsu and Hung-Yu Kao. ◆だいやまーくAbstract
P88 An Integrative Approach for Measuring Semantic Similarities using Gene Ontology. Jiajie Peng, Hongxiang Li, Qinghua Jiang, Yadong Wang and Jin Chen. ◆だいやまーくAbstract
P22 PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB Enzyme List. Masaaki Kotera, Yosuke Nishimura, Zen-Ichi Nakagawa, Ai Muto, Yuki Moriya, Shinobu Okamoto, Shuichi Kawashima, Toshiaki Katayama, Toshiaki Tokimatsu, Minoru Kanehisa and Susumu Goto. ◆だいやまーくAbstract
P81 Discovering novel protein-protein interactions by measuring the protein semantic similarity from biomedical literature. Jung-Hsien Chiang and Jiun-Huang Ju. ◆だいやまーくAbstract

Session 1.2C | 14:15 – 16:15, Day 1, 4F Meeting room1
P69 Efficient calculation of exact probability distributions of integer features on RNA secondary structures. Ryota Mori, Michiaki Hamada and Kiyoshi Asai. ◆だいやまーくAbstract
P12 Improving miRNA-mRNA Interaction Predictions. Daniel Tabas-Madrid, Ander Muniategui, Ignacio Sánchez-Caballero, Dannys Martinez-Herrera, Carlos Oscar S. Sorzano, Angel Rubio and Alberto Pascual-Montano. ◆だいやまーくAbstract
T6 Data-driven Science: SGI for Genomics Analysis. SGI – James Reaney.

DAY 2

Keynote speech 3 | 8:30 – 9:30, Day 2, 3F Auditorium
Limsoon WONG Delivering a quantum leap in the reproducibility, precision, and sensitivity of gene-expression-profile analysis even when sample size is extremely small

Session 2.1A | 9:45 – 11:15, Day 2, 3F Auditorium
P82 Systematic Approach to Escherichia coli Cell Population Control using a Genetic Lysis Circuit. Chih-Yuan Hsu, Tsu-Chun Yu, Ling-Jiun Lin, Rei-Hsing Hu and Bor-Sen Chen. ◆だいやまーくAbstract
HL108 On the limits of computational functional genomics for bacterial lifestyle prediction. Eudes Barbosa, Richard Rottger, Anne-Christin Hauschild, Vasco Azevedo and Jan Baumbach. ◆だいやまーくAbstract
P94 GWAMAR: Genome-wide assessment of mutations associated with drug resistance in bacteria. Michal Wozniak, Jerzy Tiuryn and Limsoon Wong. ◆だいやまーくAbstract

Session 2.1B | 9:45 – 11:15, Day 2, 3F Media hall
P76 IPED2X: A Robust Pedigree Reconstruction Algorithm for Complicated Pedigrees. Dan He and Eleazar Eskin. ◆だいやまーくAbstract
P09 AucPR: An AUC-based approach using penalized regression for disease prediction with high-dimensional omics data. Wenbao Yu and Taesung Park. ◆だいやまーくAbstract
P86 CaMoDi: A new method for fast Cancer Module Discovery. Alexandros Manolakos, Idoia Ochoa, Kartik Venkat, Andrea Goldsmth and Olivier Gevaert. ◆だいやまーくAbstract

Session 2.1C | 9:45 – 11:15, Day 2, 4F Meeting room1
S1 Getting involved! Activities of APBioNet. Asif M. Khan, Tin Wee Tan, Christian Schönbach and Shoba Ranganathan. ◆だいやまーくAbstract
S2 Bioinformatics opportunities in Central Asia. Christian Schönbach, Asif M. Khan, Tin Wee Tan and Shoba Ranganathan. ◆だいやまーくAbstract
T5 An ABC (Accelerated Bio Computation), using the FPGA based massively parallel architecture RIVYERA. SciEngines. ◆だいやまーくAbstract

Keynote speech 4 | 13:00 – 14:00, Day 2, 3F Auditorium
Janet KELSO What we have learned from sequencing archaic human genomes

Session 2.2A | 14:15 – 16:15, Day 2, 3F Auditorium
HL106 Detecting Evolutionary Strata on the Human X Chromosome in the Absence of Gametologous Y-Linked Sequences.
Rajeev Azad, Ravi Shanker Pandey and Melissa Wilson Sayres. ◆だいやまーくAbstract
P18 Identification of conserved and polymorphic STRs for personal genomes. Chien-Ming Chen, Chi-Pong Sio, Yu-Lun Lu, Hao-Teng Chang, Chin-Hwa Hu and Tun-Wen Pai. ◆だいやまーくAbstract
P66 SoloDel: A probabilistic model for detecting low-frequent somatic deletions from unmatched sequencing data. Junho Kim, Sanghyeon Kim, Hojung Nam, Sangwoo Kim and Doheon Lee. ◆だいやまーくAbstract
P21 Trans-species learning of cellular signaling systems with bimodal deep belief networks. Lujia Chen, Chunhui Cai, Vicky Chen and Xinghua Lu. ◆だいやまーくAbstract

Session 2.2B | 14:15 – 16:15, Day 2, 3F Media hall
P56 Implementing a modeling software for animated protein-complex interactions using a physics simulation library. Yutaka Ueno, Shuntaro Ito and Akihiko Konagaya. ◆だいやまーくAbstract
P67 ReSAPP: Predicting overlapping protein complexes by merging multiple sampled partitions of proteins. So Kobiki and Osamu Maruyama. ◆だいやまーくAbstract
P29 Discovery of Small Protein Complexes from PPI Networks. Chern Han Yong, Osamu Maruyama and Limsoon Wong. ◆だいやまーくAbstract
T3 Biological databases and modern computer science: Toxygates and EzCatDB. LEVEL FIVE – Nozomi Nagano, Johan Nyström-Persson, Kazuyoshi Ikeda, Yoshinobu Igarashi, Kenji Mizuguchi, Kentaro Tomii and Shinichi Honiden. ◆だいやまーくAbstract

Session 2.2C | 14:15 – 16:15, Day 2, 4F Meeting room1
P51 LFCseq: a nonparametric approach for differential expression analysis of RNA-seq data. Bingqing Lin, Li-Feng Zhang and Xin Chen. ◆だいやまーくAbstract
P39 Modeling DNA affinity landscape through two-round support vector regression with weighted degree kernels. Xiaolei Wang, Hiroyuki Kuwahara and Xin Gao. ◆だいやまーくAbstract
P71 Supervised learning method for predicting chromatin boundary associated insulator elements. Pawel Badnarz and Bartek Wilczynski. ◆だいやまーくAbstract

DAY 3

Keynote speech 5 | 9:00 – 10:00, Day 3, 3F Auditorium
Shinya KURODA Temporal coding of insulin action

Session 3.1A | 10:15 – 12:15, Day 3, 3F Auditorium
P58 Robustness analysis on interspecies interaction network for iron and glucose competition between Candida albicans and zebrafish during infection. Che Lin, Chin-Nan Lin, Yu-Chao Wang, Fang-Yu Liu, Yu-Wen Chien, Yung-Jun Chuang, Chung-Yu Lan, Wen-Ping Hsieh and Bor-Sen Chen. ◆だいやまーくAbstract
P23 Dynamics of enhancers in myeloid antigen presenting cells upon LPS stimulation. Alexis Vandenbon, Shunsuke Teraguchi, Osamu Takeuchi, Yutaka Suzuki and Daron Standley. ◆だいやまーくAbstract
HL109 Optimal Implementations for Reliable Circadian Clocks. Yoshihiko Hasegawa and Masanori Arita. ◆だいやまーくAbstract
HL105 Identifying active gene sub-networks from time-course gene expression profiles using TimeXNet. Ashwini Patil and Kenta Nakai. ◆だいやまーくAbstract

Session 3.1B | 10:15 – 12:15, Day 3, 3F Media hall
HL111 A Set of Structural Features Defines the Cis-Regulatory Modules of Antenna- Expressed Genes in Drosophila melanogaster. Yosvany López, Alexis Vandenbon and Kenta Nakai. ◆だいやまーくAbstract
P70 AKSmooth: Human colon methylome profiling using low-coverage bisulfite sequencing data. Junfang Chen, Pavlo Lutsik, Ruslan Akulenko, Jörn Walter and Volkhard Helms. ◆だいやまーくAbstract
HL115 Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions. Yutaka Saito, Junko Tsuji and Toutai Mituyama. ◆だいやまーくAbstract
T4 Ion ReporterTM – Local & Cloud based NGS Data Analysis Solution for Ion TorrentTM. Life Technologies Japan Ltd. ◆だいやまーくAbstract

Session 3.2A – 13:30 – 15:30, Day 3, 3F Auditorium
T7 Data-driven Science: SGI for Genomics Analysis. SGI – James Reaney.
HL107 The last straw did not break the camel’s back: searching for causative variants of polygenic disease disregards individual predisposing genomic differences. Yana Bromberg, Peter Kahn and Burkhard Rost. ◆だいやまーくAbstract
TBA
T2 On bringing genome informatics innovation to life science industry in Odaiba. AIST – Jun Sese ◆だいやまーくAbstract

Session 3.2B – 13:30 – 15:30, Day 3, 3F Media hall
P55 An O(m log m)-time algorithm for detecting superbubbles. Wing-Kin Sung, Kunihiko Sadakane, Tetsuo Shibuya, Abha Belorkar and Iana Pyrogova. ◆だいやまーくAbstract
P77 An Efficient Search Algorithm for Finding Genomic-range Overlaps Based on the Maximum Range Length. Ho-Sik Seok, Taemin Song, Sek Won Kong and Kyu-Baek Hwang. ◆だいやまーくAbstract
P91 HyDA-Vista: Towards Optimal Guided Selection of k-mer Size for Sequence Assembly. Seyed Basir Shariat Razavi, Narjes Sadat Movahedi Tabrizi, Hamidreza Chitsaz and Christina Boucher. ◆だいやまーくAbstract
P34 Aligned Genomic Data Compression via Improved Modeling. Idoia Ochoa, Mikel Hernaez and Tsachy Weissman. ◆だいやまーくAbstract

Keynote speech 6 | 16:00 – 17:00, Day 3, 3F Auditorium
Alfonso VALENCIA Cancer Genomics and Computational Biology

P: Proceedings Track HL: Highlight Track T: Technology Track S: Special Track

Last update : Dec. 2, 2014

Conference Dinner – Banquet

Enjoy the conference dinner at GRAND PACIFIC LE DAIBA!

It is included in your registration. Individual dinner ticket for your family is available on the day. Do not hesitate to take your partner to the dinner. Contact us for details.
[画像:buffet]

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