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Results and Discussion

Two types of testing were performed. 7-fold cross-validated predictions on 480 proteins are discussed first, then the results of `blind' tests on 406 new proteins not used in the development of the methods.

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• Effect of searching method on accuracy
• Effect of alignment method on accuracy
• Effect of removing gaps from query sequence
• Effect of training on PSIBLAST profiles
• Effect of re-training `no jury' positions
• Prediction of solvent accessibility
• Blind test of prediction methods
• Reliability scoring

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James Cuff
2001年06月29日