A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications

Format examples: Raw | FASTA | MSF | BLC | Batch


Raw Format Example

Copy the content of the block below to use as an example (also available as a separate file: link)

MQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGC

Back to the top of the page...

FASTA Format Example

Copy the content of the block below to use as an example (also available as a separate file: link)

>0_1a
apaFS---ASGASDGQSVSVSVAAAGETYYIAQCAPVGGQDACNPATATSFTTDASGAASFSFTVRKSYAGQ
TPSGTPVGSVDCATDACNLGAGNSGLNLGHVALTFG>1_MA
APGVTVTPATGLSNGQTVTVSATTPGTVYHVGQCAVVEGVIGCDATTSTDVTADAAGKITAQLKVHSSFQAV
VANGTPWGTVNCKVVSCSAGLGSDSGEGAAQAITFA>2_KE
SAAVSVSPATGLADGATVTVSASATSTSATALQCAILAGRGACNVAEFHDFSLSG-GEGTTSVVVRRSFTGY
VPDGPEVGAVDCDTAPCEIVVGGNTGEYGNAAISFG>3_NC
APTATVTPSSGLSDGTVVKVAGAQAGTAYDVGQCAWVDGVLACNPADFSSVTADANGSASTSLTVRRSFEGF
LFDGTRWGTVDCTTAACQVGLSDAAGNGPGVAISFN 

Back to the top of the page...

MSF Format Example

Copy the content of the block below to use as an example (also available as a separate file: link)

 /tmp/filelPdICy MSF: 108 Type: N January 01, 1776 12:00 Check: 2741 ..
 Name: 0_1a Len: 108 Check: 4063 Weight: 1.00
 Name: 1_MA Len: 108 Check: 4875 Weight: 1.00
 Name: 2_KE Len: 108 Check: 449 Weight: 1.00
 Name: 3_NC Len: 108 Check: 3354 Weight: 1.00
//
 0_1a APAFSVSPAS GASDGQSVSV SVAAAGETYY IAQCAPVGGQ DACNPATATS
 1_MA APGVTVTPAT GLSNGQTVTV SATTPGTVYH VGQCAVVEGV IGCDATTSTD
 2_KE SAAVSVSPAT GLADGATVTV SASATSTSAT ALQCAILAGR GACNVAEFHD
 3_NC APTATVTPSS GLSDGTVVKV AGAQAGTAYD VGQCAWVDGV LACNPADFSS
 0_1a FTTDASGAAS FSFTVRKSYA GQTPSGTPVG SVDCATDACN LGAGNSGLNL
 1_MA VTADAAGKIT AQLKVHSSFQ AVVANGTPWG TVNCKVVSCS AGLGSDSGEG
 2_KE FSLSG.GEGT TSVVVRRSFT GYVPDGPEVG AVDCDTAPCE IVVGGNTGEY
 3_NC VTADANGSAS TSLTVRRSFE GFLFDGTRWG TVDCTTAACQ VGLSDAAGNG
 0_1a GHVALTFG
 1_MA AAQAITFA
 2_KE GNAAISFG
 3_NC PGVAISFN

Back to the top of the page...

BLC Format Example

Copy the content of the block below to use as an example (also available as a separate file: link)

>0_1a Name>1_MA Name>2_KE Name>3_NC Name
* iteration 1
AASA
PPAP
AGAT
FVVA
STST
VVVV
STST
PPPP
AAAS
STTS
GGGG
ALLL
SSAS
DNDD
GGGG
QQAT
STTV
VVVV
STTK
VVVV
SSSA
VAAG
ATSA
ATAQ
APTA
GGSG
ETTT
TVSA
YYAY
YHTD
IVAV
AGLG
QQQQ
CCCC
AAAA
PVIW
VVLV
GEAD
GGGG
QVRV
DIGL
AGAA
CCCC
NDNN
PAVP
ATAA
TTED
ASFF
TTHS
SDDS
FVFV
TTST
TALA
DDSD
AAGA
SA N
GGGG
AKES
AIGA
STTS
FATT
SQSS
FLVL
TKVT
VVVV
RHRR
KSRR
SSSS
YFFF
AQTE
GAGG
QVYF
TVVL
PAPF
SNDD
GGGG
TTPT
PPER
VWVW
GGGG
STAT
VVVV
DNDD
CCCC
AKDT
TVTT
DVAA
ASPA
CCCC
NSEQ
LAIV
GGVG
ALVL
GGGS
NSGD
SDNA
GSTA
LGGG
NEEN
LGYG
GAGP
HANG
VQAV
AAAA
LIII
TTSS
FFFF
GAGN
*

Back to the top of the page...

Batch Format Example (Note: batch submission has to be in FASTA format)

Copy the content of the block below to use as an example (also available as a separate file: link)

>my_seq1
MKFLVLLFNILCLFPILGADELVMSPIPTTDVQPKVTFDINSEVSSGPLYLNPVEMAGVK
YLQLQRQPGVQVHKVVEGDIVIWENEEMPLYTCAIVTQNEVPYMAYVELLEDPDLIFFLK
EGDQWAPIPEDQYLARLQQLRQQIHTESFFSLNLSFQHENYKYEMVSSFQHSIKMVVFTP
KNGHICKMVYDKNIRIFKALYNEYVTSVIGFFRGLKLLLLNIFVIDDRGMIGNKYFQLLD
DKYAPISVQGYVATIPKLKDFAEPYHPIILDISDIDYVNFYLGDATYHDPGFKIVPKTPQ
CITKVVDGNEVIYESSNPSVECVYKVTYYDKKNESMLRLDLNHSPPSYTSYYAKREGVWV
TSTYIDLEEKIEELQDHRSTELDVMFMSDKDLNVVPLTNGNLEYFMVTPKPHRDIIIVFD
GSEVLWYYEGLENHLVCTWIYVTEGAPRLVHLRVKDRIPQNTDIYMVKFGEYWVRISKTQ>my_seq2
MASVKSSSSSSSSSFISLLLLILLVIVLQSQVIECQPQQSCTASLTGLNVCAPFLVPGSP
TASTECCNAVQSINHDCMCNTMRIAAQIPAQCNLPPLSCSAN>my_seq3
MEKKSIAGLCFLFLVLFVAQEVVVQSEAKTCENLVDTYRGPCFTTGSCDDHCKNKEHLLS
GRCRDDVRCWCTRNC

Back to the top of the page...

Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.
  • AltStyle によって変換されたページ (->オリジナル) /