| Data item | Description |
|---|
| Database Name |
database name
JSNP_SNP: single nucleotide polymorphism
JSNP_InsDel_IND: insertion/deletion
JSNP_InsDel_MIC: microsatelite
|
| JSNP ID |
JSNP ID
ID starting with IMS-JST: from IMS and JST
ID starting with ssj: from RIKEN SNP Research Center or from Tokyo Women's Medical University
|
| Allele Frequency |
(only in SimpleSearch pages) link to Allele Frequency of the same JSNP ID |
| Screening Information |
(only in SimpleSearch pages) link to Screening Information of the same JSNP ID |
| Mapping Information |
(only in SimpleSearch pages) link to Mapping Information of the same JSNP ID |
| Integrated List |
(only in SimpleSearch pages) link to Integrated List of the same JSNP ID |
| dbSNP ss# |
dbSNP ss (submitted SNP) number assigned |
| dbSNP rs# |
dbSNP rs (reference SNP) number assigned |
| 5' Flanking Sequence |
5' flanking sequence |
| Observed |
allele observed |
| 3' Flanking Sequence |
3' flanking sequence |
| Offset in Flanking Sequence |
position of the polymorphism in the flanking sequence |
| Total Length |
total length of the flanking sequence |
| Accession No. |
accession No. of the sequence for polymorphism screening |
| Offset in Record |
position of the polymorphism in the sequence for polymorphism screening |
| Comment Type |
1: the polymorphism overlaps with a repetitive sequence
2: the flanking sequence overlaps with a repetitive sequence
|
| Gene Symbol |
gene where the polymorphism is found
(information from LocusLink, GenBank and Unigene)
|
| JSNP previous ID |
JSNP previous ID
(IDs of IMS-JST104817 to IMS-JST105472 and IMS-JST075266 to IMS-JST075585 are reassigned with ssj IDs)
|
| JSNP reference ID |
JSNP reference ID
(where multiple JSNP IDs are assigned to the same polymorphism)
|