clustifyrdatahub

This is the released version of clustifyrdatahub; for the devel version, see clustifyrdatahub.

External data sets for clustifyr in ExperimentHub

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DOI: 10.18129/B9.bioc.clustifyrdatahub

Bioconductor version: Release (3.22)

References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr to assign cell type identities.

Author: Rui Fu [aut] ORCID iD ORCID: 0000-0001-8183-4549 , Kent Riemondy [aut, cre] ORCID iD ORCID: 0000-0003-0750-1273 , RNA Bioscience Initiative [fnd], Austin Gillen [ctb] ORCID iD ORCID: 0000-0003-2928-6308 , Jay Hesselberth [ctb] ORCID iD ORCID: 0000-0002-6299-179X , Sidhant Puntambekar [ctb]

Maintainer: Kent Riemondy <kent.riemondy at cuanschutz.edu>

Citation (from within R, enter citation("clustifyrdatahub")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("clustifyrdatahub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clustifyrdatahub")

clustifyrdatahub HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, MicroarrayData, PackageTypeData, RNASeqData, SequencingData, SingleCellData

Version 1.20.0

License MIT + file LICENSE

Depends R (>= 4.0), ExperimentHub

Imports utils

System Requirements

URL https://rnabioco.github.io/clustifyrdatahub/

Bug Reports https://github.com/rnabioco/clustifyrdatahub/issues

Suggests clustifyr, Seurat, usethis, rmarkdown, knitr, tidyr, BiocStyle

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package clustifyrdatahub_1.20.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/clustifyrdatahub

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clustifyrdatahub

Package Short Url https://bioconductor.org/packages/clustifyrdatahub/

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