TCGAWorkflowData

This is the released version of TCGAWorkflowData; for the devel version, see TCGAWorkflowData.

Data for TCGA Workflow

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DOI: 10.18129/B9.bioc.TCGAWorkflowData

Bioconductor version: Release (3.22)

This experimental data package contains 11 data sets necessary to follow the "TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages".

Author: Tiago Chedraoui Silva <tiagochst at gmail.com>

Maintainer: Tiago Chedraoui Silva <tiagochst at gmail.com>

Citation (from within R, enter citation("TCGAWorkflowData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("TCGAWorkflowData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TCGAWorkflowData")

'Example data for TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages' HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CancerData, ExperimentData, Homo_sapiens_Data, MicroarrayData

Version 1.34.0

License GPL-3

Depends R (>= 3.5.0)

Imports SummarizedExperiment

System Requirements

URL https://f1000research.com/articles/5-1542/v2

Bug Reports https://github.com/BioinformaticsFMRP/TCGAWorkflow/issues

Suggests knitr, rmarkdown, pander, testthat, BiocStyle

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Follow Installation instructions to use this package in your R session.

Source Package TCGAWorkflowData_1.34.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/TCGAWorkflowData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TCGAWorkflowData

Package Short Url https://bioconductor.org/packages/TCGAWorkflowData/

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